Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3228

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3227: 11595 - K12854 SNRNP200, BRR2 pre-mRNA-splicing helicase BRR2, at 143143 to 150132 11595 mRNA_3228: 11596 - Hypothetical Protein, at 150554 to 152280 11596 mRNA_3229: 11597 - K01113 phoD alkaline phosphatase D, at 152510 to 154539 11597

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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150,642 + -1.2
150,682 + -0.4
150,721 + 1.1
150,806 + 11596 mRNA_3228 0.15 1.1
150,824 + 11596 mRNA_3228 0.16 0.4
150,847 - 11596 mRNA_3228 0.17 -1.3
150,860 + 11596 mRNA_3228 0.18 -1.0
150,894 + 11596 mRNA_3228 0.20 -0.4
151,015 + 11596 mRNA_3228 0.27 -2.1
151,122 - 11596 mRNA_3228 0.33 0.4
151,233 + 11596 mRNA_3228 0.39 -0.7
151,280 - 11596 mRNA_3228 0.42 -0.2
151,308 + 11596 mRNA_3228 0.44 -2.6
151,337 - 11596 mRNA_3228 0.45 0.4
151,344 + 11596 mRNA_3228 0.46 0.2
151,523 + 11596 mRNA_3228 0.56 0.8
151,598 + 11596 mRNA_3228 0.60 -0.1
151,667 + 11596 mRNA_3228 0.64 -1.2
151,694 - 11596 mRNA_3228 0.66 0.5
151,708 - 11596 mRNA_3228 0.67 -0.9
151,708 - 11596 mRNA_3228 0.67 1.5
151,708 - 11596 mRNA_3228 0.67 1.1
151,708 + 11596 mRNA_3228 0.67 2.2
151,709 + 11596 mRNA_3228 0.67 -2.4
151,709 - 11596 mRNA_3228 0.67 -2.0
151,709 - 11596 mRNA_3228 0.67 -1.5
151,713 + 11596 mRNA_3228 0.67 0.4
151,765 + 11596 mRNA_3228 0.70 2.8
151,849 + 11596 mRNA_3228 0.75 -0.1
152,208 + -1.8
152,295 - -0.6
152,299 - 0.8
152,321 - -2.4
152,344 + 0.3
152,557 + 1.4
152,591 + 0.2
152,600 + -0.7
152,679 - -2.5
152,720 - 11597 mRNA_3229 0.10 -0.4
152,993 - 11597 mRNA_3229 0.24 -0.4
153,047 - 11597 mRNA_3229 0.26 -0.5
153,166 - 11597 mRNA_3229 0.32 1.1
153,179 + 11597 mRNA_3229 0.33 -0.3