Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3209

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3208: 11576 - HMMPfam-Meiotically up-regulated gene 113-PF13455, at 92724 to 94778 11576 mRNA_3209: 11577 - Hypothetical Protein, at 95744 to 98235 11577 mRNA_3210: 11578 - K03512 POLL DNA polymerase lambda, at 98514 to 102281 11578

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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94,840 - 2.8
94,881 + 1.4
95,002 - -0.4
95,021 + -0.2
95,180 + -1.0
95,183 + 0.0
95,271 + 2.9
95,345 + 0.8
95,350 - -1.8
95,609 - -1.0
95,610 + -0.7
95,617 + -1.6
95,846 - 0.5
96,035 - 11577 mRNA_3209 0.12 -0.7
96,158 + 11577 mRNA_3209 0.17 1.0
96,573 + 11577 mRNA_3209 0.33 0.1
96,712 - 11577 mRNA_3209 0.39 1.2
96,793 - 11577 mRNA_3209 0.42 0.4
96,794 + 11577 mRNA_3209 0.42 1.1
96,855 - 11577 mRNA_3209 0.45 -2.7
96,915 + 11577 mRNA_3209 0.47 -0.7
97,251 - 11577 mRNA_3209 0.60 -0.4
97,537 - 11577 mRNA_3209 0.72 0.3
97,601 + 11577 mRNA_3209 0.75 0.2
97,603 - 11577 mRNA_3209 0.75 1.3
97,617 - 11577 mRNA_3209 0.75 0.7
97,638 - 11577 mRNA_3209 0.76 -0.8
97,774 + 11577 mRNA_3209 0.81 0.1
97,931 - 11577 mRNA_3209 0.88 -1.2
98,043 - -0.9
98,218 + -1.7
98,298 + -0.7
98,353 + 0.4
98,462 + -0.7
98,532 + 0.3
98,833 - -0.5
98,863 - -1.4
99,078 + 11578 mRNA_3210 0.15 1.2
99,112 + 11578 mRNA_3210 0.16 -0.4