Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3201

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3200: 11568 - KOG1515 Arylacetamide deacetylase, at 73993 to 76977 11568 mRNA_3201: 11569 - K12175 GPS1, COPS1, CSN1 COP9 signalosome complex subunit 1, at 77177 to 79098 11569 mRNA_3202: 11570 - KOG2533 Permease of the major facilitator superfamily, at 79575 to 81413 11570

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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76,341 - 11568 mRNA_3200 0.79 0.5
76,346 - 11568 mRNA_3200 0.79 0.0
76,397 + 11568 mRNA_3200 0.81 -0.1
76,460 - 11568 mRNA_3200 0.83 -1.8
76,649 + 11568 mRNA_3200 0.89 0.5
76,954 - -1.1
76,966 - 1.4
76,976 + -0.2
76,992 - -1.9
76,992 - -0.1
76,992 - 0.0
76,999 + -1.6
77,084 - -0.1
77,240 - 0.1
77,250 - -1.8
77,369 - -0.2
77,380 + 11569 mRNA_3201 0.11 -0.5
77,649 - 11569 mRNA_3201 0.25 -1.2
77,832 + 11569 mRNA_3201 0.34 1.0
77,883 + 11569 mRNA_3201 0.37 1.4
78,842 + 11569 mRNA_3201 0.87 -0.2
78,994 + -0.2
78,999 - 0.5
79,279 - 3.0
79,285 - 0.1
79,346 - 0.6
79,467 + -0.0
79,968 + 11570 mRNA_3202 0.21 0.3