Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3181

Experiments: 40 hrs No Buoyancy Separation

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3180: 11548 - ProSitePatterns-Zinc finger RanBP2-type signature.-PS01358,SUPERFAMILY--SSF90209, at 29208 to 30655 11548 mRNA_3181: 11549 - KOG4842 Protein involved in sister chromatid separation and/or segregation, at 30988 to 32695 11549 mRNA_3182: 11550 - KOG1575 Voltage-gated shaker-like K+ channel, subunit beta/KCNAB, at 33172 to 34723 11550

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
remove
30,145 - 11548 mRNA_3180 0.65 -0.5
30,182 + 11548 mRNA_3180 0.67 -2.2
30,281 + 11548 mRNA_3180 0.74 0.2
30,285 - 11548 mRNA_3180 0.74 2.5
30,341 + 11548 mRNA_3180 0.78 2.5
30,446 - 11548 mRNA_3180 0.85 -0.8
30,583 - 0.7
30,602 - 0.0
30,725 + -0.1
30,812 + -0.1
30,890 - -0.2
30,897 + -1.3
31,018 - -0.0
31,022 - 0.1
31,272 + 11549 mRNA_3181 0.17 -1.0
31,364 - 11549 mRNA_3181 0.22 0.7
31,756 - 11549 mRNA_3181 0.45 -0.7
31,759 - 11549 mRNA_3181 0.45 -1.2
31,938 + 11549 mRNA_3181 0.56 2.1
32,444 + 11549 mRNA_3181 0.85 -0.5
32,630 - -0.4
32,646 - 0.4
32,777 + 0.7
32,780 - 0.3
32,912 + 0.8
32,929 + 1.0
32,933 - -2.1
32,985 - -0.4
32,996 + 1.1
32,999 + 0.6
33,009 - 1.0
33,011 + -2.3
33,092 - -0.5
33,150 - 1.0
33,315 - -1.8
33,325 + -0.5
33,326 + 0.3
33,328 - 11550 mRNA_3182 0.10 0.6
33,329 + 11550 mRNA_3182 0.10 -0.8
33,422 + 11550 mRNA_3182 0.16 -0.3
33,422 + 11550 mRNA_3182 0.16 -0.6
33,424 - 11550 mRNA_3182 0.16 1.7
33,590 + 11550 mRNA_3182 0.27 0.2
33,593 - 11550 mRNA_3182 0.27 -0.4
33,596 - 11550 mRNA_3182 0.27 0.3
33,602 + 11550 mRNA_3182 0.28 -1.2
33,602 + 11550 mRNA_3182 0.28 -0.7
33,623 + 11550 mRNA_3182 0.29 -0.2
33,691 + 11550 mRNA_3182 0.33 0.4
33,691 + 11550 mRNA_3182 0.33 0.4