Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3172

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3171: 11539 - ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048, at 4085 to 5766 11539 mRNA_3172: 11540 - Hypothetical Protein, at 6329 to 7697 11540 mRNA_3173: 11541 - K09497 CCT5 T-complex protein 1 subunit epsilon, at 7947 to 10272 11541

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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5,341 - 11539 mRNA_3171 0.75 0.4
5,477 + 11539 mRNA_3171 0.83 -1.7
5,496 - 11539 mRNA_3171 0.84 -0.2
5,503 + 11539 mRNA_3171 0.84 -0.4
5,510 + 11539 mRNA_3171 0.85 -0.4
5,514 + 11539 mRNA_3171 0.85 0.1
5,600 + 0.3
5,646 - 1.4
5,663 - -2.0
5,664 + -0.2
5,769 + 0.6
5,779 - 0.2
5,781 + -0.9
5,795 - -1.6
5,801 - -1.4
5,801 + -1.3
5,803 - -0.0
5,822 - -1.0
5,824 + 0.8
5,828 - 3.4
5,835 - 1.6
5,836 - -0.9
5,836 + -0.7
5,841 - 0.1
5,842 + -2.9
5,852 - -0.0
5,868 - -1.7
5,971 + 0.7
5,974 + -0.1
5,974 - -0.4
5,978 + 0.8
5,979 - -0.1
5,981 + -1.0
5,983 + 0.5
5,984 + 1.1
5,989 - 0.0
5,991 + 0.1
6,000 + 1.2
6,001 + 2.0
6,002 - -0.5
6,008 + 0.7
6,040 - 2.0
6,068 + -0.0
6,084 + 1.1
6,084 - -0.8
6,089 + 0.5
6,094 - -0.0
6,095 - 0.7
6,096 + 0.3
6,097 + 2.0
6,099 - 0.6
6,100 + 1.6
6,110 - 0.0
6,150 + 1.4
6,153 - 1.1
6,167 + -2.0
6,180 + 1.0
6,186 - 1.6
6,194 + -0.1
6,204 + 1.5
6,230 + -0.3
6,252 - 0.6
6,310 - 2.7
6,311 - -0.4
6,321 - -0.1
6,323 + 2.1
6,327 + -0.1
6,328 - 1.8
6,330 - 1.4
6,332 - 0.7
6,333 + -1.2
6,333 + 1.5
6,334 - -1.1
6,343 + 0.7
6,347 - 0.4
6,348 + 0.9
6,349 + 2.0
6,349 - -1.6
6,353 + 0.3
6,362 - -0.7
6,364 + -1.0
6,368 + -0.4
6,369 + 0.6
6,370 + -0.2
6,372 + -0.9
6,376 - -1.9
6,387 + 2.1
6,390 - 0.5
6,392 + 1.0
6,403 + -0.5
6,408 + -2.6
6,410 + 0.1
6,419 + 0.6
6,466 + 11540 mRNA_3172 0.10 -1.1
6,471 + 11540 mRNA_3172 0.10 1.1
6,501 + 11540 mRNA_3172 0.13 3.0
6,512 + 11540 mRNA_3172 0.13 1.1
6,520 + 11540 mRNA_3172 0.14 1.1
6,556 - 11540 mRNA_3172 0.17 2.2
6,563 + 11540 mRNA_3172 0.17 -2.5
6,570 + 11540 mRNA_3172 0.18 -0.5
6,577 + 11540 mRNA_3172 0.18 -2.8
6,580 + 11540 mRNA_3172 0.18 1.4
6,652 - 11540 mRNA_3172 0.24 0.6
6,680 + 11540 mRNA_3172 0.26 0.4
6,730 - 11540 mRNA_3172 0.29 1.6
6,750 - 11540 mRNA_3172 0.31 -1.0
6,886 + 11540 mRNA_3172 0.41 -0.6
6,998 - 11540 mRNA_3172 0.49 1.6
7,000 - 11540 mRNA_3172 0.49 -0.2
7,011 + 11540 mRNA_3172 0.50 -0.7
7,286 + 11540 mRNA_3172 0.70 -1.1
7,389 + 11540 mRNA_3172 0.77 1.3
7,459 + 11540 mRNA_3172 0.83 -0.7
7,565 + -2.0
7,619 + -0.3
7,740 - -0.2
7,759 + -0.0
7,902 - -1.3
7,928 + -0.7