Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3169

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3169: 11537 - Hypothetical Protein, at 529 to 1526 11537 mRNA_3170: 11538 - Hypothetical Protein, at 2174 to 3237 11538

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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12 + 1.3
12 + -1.0
15 + 0.9
16 + 1.5
18 + 0.5
22 + -0.8
25 + 0.2
57 - -1.8
61 - -0.0
62 + -0.2
62 + 0.8
66 + -1.0
72 + 0.1
72 + -1.6
72 + -1.3
75 + 0.7
78 - -1.0
105 + 0.6
110 - -2.0
114 + 0.1
115 + -1.6
118 + 0.3
122 + 0.2
122 - 1.2
124 + 0.4
135 + 1.3
147 + -0.6
157 + 1.5
161 + 0.6
168 + -3.2
174 + 0.7
177 - 0.4
228 + -2.4
247 + 1.5
252 - -0.5
253 - 0.5
255 + -0.0
258 + 0.2
264 - -0.1
269 + -0.5
269 - 0.2
274 + 0.6
275 - 0.0
277 + -0.1
280 + -1.4
280 + -0.0
283 - 0.1
285 - 0.2
287 + -0.4
287 + 1.2
288 + 0.1
292 - 0.3
293 + -0.1
298 + -0.9
305 - 0.0
314 + -1.5
320 + -1.6
368 + 0.1
370 - 0.6
372 + -1.7
382 + -0.2
384 + 0.7
391 + -0.2
391 - -2.1
397 + 1.5
397 - 0.9
402 + 0.2
405 + 0.5
423 - -0.5
430 + 1.1
440 + -0.3
446 + -0.1
470 + 0.3
524 + -0.9
532 + -0.4
545 - 2.2
557 + 1.3
569 + 1.7
570 - 0.5
583 + 0.2
584 + 1.5
603 - 0.2
603 + 0.2
634 - 11537 mRNA_3169 0.11 0.0
636 + 11537 mRNA_3169 0.11 -0.3
646 + 11537 mRNA_3169 0.12 1.1
661 + 11537 mRNA_3169 0.13 -0.5
667 + 11537 mRNA_3169 0.14 -1.3
698 + 11537 mRNA_3169 0.17 -0.2
704 - 11537 mRNA_3169 0.18 -0.4
705 - 11537 mRNA_3169 0.18 1.8
721 - 11537 mRNA_3169 0.19 -0.8
725 + 11537 mRNA_3169 0.20 1.5
738 - 11537 mRNA_3169 0.21 1.1
849 + 11537 mRNA_3169 0.32 0.6
871 + 11537 mRNA_3169 0.34 -1.5
883 + 11537 mRNA_3169 0.35 1.4
894 + 11537 mRNA_3169 0.37 -0.1
895 + 11537 mRNA_3169 0.37 -0.2
922 + 11537 mRNA_3169 0.39 0.2
965 - 11537 mRNA_3169 0.44 -0.4
1,012 - 11537 mRNA_3169 0.48 -0.1
1,026 + 11537 mRNA_3169 0.50 -1.0
1,026 + 11537 mRNA_3169 0.50 1.2
1,105 + 11537 mRNA_3169 0.58 -0.8
1,123 + 11537 mRNA_3169 0.60 -0.0
1,141 + 11537 mRNA_3169 0.61 -0.2
1,142 + 11537 mRNA_3169 0.61 1.8
1,165 + 11537 mRNA_3169 0.64 0.5
1,174 - 11537 mRNA_3169 0.65 -1.2
1,174 + 11537 mRNA_3169 0.65 -1.1
1,259 + 11537 mRNA_3169 0.73 1.5
1,265 + 11537 mRNA_3169 0.74 0.7
1,268 + 11537 mRNA_3169 0.74 1.3
1,269 - 11537 mRNA_3169 0.74 -0.8
1,288 - 11537 mRNA_3169 0.76 -1.5
1,297 + 11537 mRNA_3169 0.77 -1.2
1,303 - 11537 mRNA_3169 0.78 0.8
1,399 + 11537 mRNA_3169 0.87 -2.4
1,412 - 11537 mRNA_3169 0.88 -1.1
1,419 - 11537 mRNA_3169 0.89 0.6
1,423 - 11537 mRNA_3169 0.90 -3.2
1,429 - 0.8
1,453 + 0.4
1,459 + 0.8
1,459 + 0.0
1,460 - -0.7
1,461 + -0.8
1,462 + 0.6
1,467 + 1.1
1,470 - -3.4
1,474 - -0.1
1,485 + 0.7
1,520 + -1.4
1,523 + 1.0
1,531 - 0.7
1,537 + -0.3
1,541 + 1.3
1,562 + 0.8
1,567 + 1.1
1,572 + -2.4
1,582 - 0.9
1,584 - -0.7
1,589 + -1.1
1,596 - -0.2
1,601 - -2.0
1,602 + -1.4
1,605 + 0.7
1,609 + 0.8
1,616 + -3.3
1,636 + 1.0
1,654 + 0.8
1,656 - 1.5
1,666 + -0.6
1,675 - 0.5
1,682 - -1.0
1,697 - 0.1
1,709 + -2.0
1,709 - 0.2
1,711 + -0.6
1,718 - 1.4
1,719 + -0.8
1,722 - 0.2
1,723 + 0.3
1,725 - 0.7
1,725 - 0.9
1,727 + -2.4
1,730 + -0.3
1,731 + 0.8
1,732 + 2.8
1,732 + 0.5
1,734 + -2.4
1,734 + -0.5
1,734 + 0.4
1,739 - -1.0
1,740 + 0.8
1,744 - 1.4
1,747 + 0.4
1,749 + -1.7
1,759 + 0.3
1,759 + 0.0
1,759 + 1.5
1,761 + -0.6
1,763 + -2.7
1,765 + 0.9
1,767 + 1.6
1,769 + 0.2
1,772 + -0.4
1,772 + -0.7
1,774 + -1.0
1,774 + -0.7
1,775 + 0.4
1,776 - 2.1
1,776 + 0.7
1,777 + 1.0
1,778 + 2.1
1,778 - -0.5
1,781 - 1.9
1,783 - -0.8
1,783 - -0.8
1,783 - 2.0
1,783 - -1.6
1,784 + -0.7
1,789 + 2.0
1,789 - 0.0
1,791 + -0.1
1,792 + -2.9
1,793 + 1.4
1,795 + 0.1
1,796 + -1.6
1,796 - 1.0
1,798 + 1.4
1,800 + -1.4
1,801 + 0.1
1,805 + -0.3
1,805 + 0.1
1,807 + 0.4
1,813 - 0.4
1,814 + 0.3
1,814 + 0.5
1,818 - 1.0
1,851 - 1.0
1,874 + -0.3
1,881 - 1.2
1,885 - -0.1
1,891 - -2.3
1,896 - -0.8
1,912 + 0.6
1,912 + 0.4
1,914 - -1.0
1,916 - -0.1
1,917 - 1.2
1,919 + -1.3
1,922 - 1.4
1,923 - 1.0
1,934 - 1.3
1,935 + -0.7
1,938 - -1.1
1,938 - -0.7
1,940 - -0.2
1,941 + -0.8
1,941 + -0.5
1,942 + 0.2
1,943 - -2.4
1,944 + 0.4
1,944 - 0.3
1,945 - 0.8
1,945 + 0.2
1,946 - -0.5
1,947 + 0.6
1,960 - 0.4
1,968 + 0.1
1,980 + 2.1
2,015 + -1.3
2,067 - 0.3
2,081 - -0.2
2,091 + 0.5
2,220 + -0.2
2,229 - 0.9
2,235 - 0.1
2,237 - 0.5
2,242 + -1.4
2,242 - 0.1
2,245 - 1.6
2,248 - -2.8
2,251 + 0.7
2,254 - -0.2
2,261 + -0.1
2,262 - -0.5
2,266 + 2.8
2,268 + -1.5
2,400 + 11538 mRNA_3170 0.21 -1.1
2,401 - 11538 mRNA_3170 0.21 -0.9
2,404 + 11538 mRNA_3170 0.22 -2.2
2,414 + 11538 mRNA_3170 0.23 0.6
2,420 - 11538 mRNA_3170 0.23 1.6
2,439 + 11538 mRNA_3170 0.25 0.8
2,446 + 11538 mRNA_3170 0.26 2.2
2,470 - 11538 mRNA_3170 0.28 1.2
2,516 - 11538 mRNA_3170 0.32 -1.9