Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3159

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3158: 11526 - KOG0453 Aconitase/homoaconitase (aconitase superfamily), at 451339 to 452325 11526 mRNA_3159: 11527 - K15437 AIMP1, ARC1 aminoacyl tRNA synthase complex-interacting multifunctional protein 1, at 452393 to 454134 11527 mRNA_3160: 11528 - Hypothetical Protein, at 454930 to 455731 11528

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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451,401 + -0.5
451,523 + 11526 mRNA_3158 0.19 1.4
451,674 + 11526 mRNA_3158 0.34 0.0
451,679 + 11526 mRNA_3158 0.34 -2.6
451,710 + 11526 mRNA_3158 0.38 -0.1
451,820 + 11526 mRNA_3158 0.49 -2.1
451,825 + 11526 mRNA_3158 0.49 -0.7
451,839 + 11526 mRNA_3158 0.51 -0.7
451,849 + 11526 mRNA_3158 0.52 0.0
451,953 - 11526 mRNA_3158 0.62 1.9
451,962 + 11526 mRNA_3158 0.63 0.8
451,963 - 11526 mRNA_3158 0.63 0.4
451,972 - 11526 mRNA_3158 0.64 -1.2
451,973 + 11526 mRNA_3158 0.64 1.5
451,977 - 11526 mRNA_3158 0.65 1.5
452,121 + 11526 mRNA_3158 0.79 -1.7
452,139 + 11526 mRNA_3158 0.81 -0.2
452,158 + 11526 mRNA_3158 0.83 -0.3
452,257 + 0.5
452,259 + -1.0
452,262 + -0.5
452,271 - 0.0
452,274 - -0.2
452,274 - -0.6
452,279 - -0.4
452,279 + -0.7
452,284 + -0.5
452,284 + -0.6
452,284 + -0.8
452,285 - -1.3
452,401 - 0.0
452,425 - 0.6
452,426 - -0.4
452,427 + -2.2
452,430 + -1.1
452,464 - -0.2
452,562 - 0.1
452,564 + 2.2
452,576 + 11527 mRNA_3159 0.11 -1.0
452,870 + 11527 mRNA_3159 0.27 0.5
452,872 + 11527 mRNA_3159 0.27 -2.6
453,000 - 11527 mRNA_3159 0.35 1.3
453,010 - 11527 mRNA_3159 0.35 -1.0
453,059 - 11527 mRNA_3159 0.38 -0.7
453,140 - 11527 mRNA_3159 0.43 -0.6
453,281 + 11527 mRNA_3159 0.51 -3.9
453,437 + 11527 mRNA_3159 0.60 0.4
453,441 + 11527 mRNA_3159 0.60 -0.7
453,606 + 11527 mRNA_3159 0.70 -0.8
453,739 - 11527 mRNA_3159 0.77 0.6
453,748 - 11527 mRNA_3159 0.78 0.3
453,759 + 11527 mRNA_3159 0.78 0.1
453,761 + 11527 mRNA_3159 0.79 -1.5
453,772 - 11527 mRNA_3159 0.79 0.8
453,776 - 11527 mRNA_3159 0.79 2.4
453,851 - 11527 mRNA_3159 0.84 0.2
453,851 + 11527 mRNA_3159 0.84 -0.0
453,861 - 11527 mRNA_3159 0.84 0.4
453,872 + 11527 mRNA_3159 0.85 0.1
453,881 + 11527 mRNA_3159 0.85 -0.7
453,898 + 11527 mRNA_3159 0.86 0.2
453,900 - 11527 mRNA_3159 0.87 0.0
453,910 - 11527 mRNA_3159 0.87 1.9
453,964 - 1.3
453,965 - 0.5
453,971 - -2.1
454,003 - 3.2
454,018 - -1.2
454,022 + -0.2
454,023 - 0.4
454,049 + -0.1
454,057 - 0.6
454,060 - 0.2
454,060 - -0.2
454,063 + -0.2
454,065 - 1.4
454,068 + -0.8
454,078 + -0.8
454,089 + -0.1
454,102 + -0.5
454,129 - 0.9
454,139 - 0.1
454,148 - -1.5
454,180 - 0.9
454,184 - -0.3
454,216 - 0.5
454,218 - -0.8
454,220 - -1.4
454,234 + -0.8
454,240 + -0.5
454,240 - -0.9
454,245 + -0.9
454,246 + -0.1
454,253 - 0.4
454,259 - -0.1
454,274 + 0.3
454,275 + -1.8
454,278 + -1.8
454,283 + -0.3
454,304 - -0.4
454,348 - -0.6
454,362 - -0.3
454,380 + 0.6
454,393 - -0.6
454,470 - 0.8
454,477 - -0.7
454,503 - -0.1
454,507 - -0.5
454,552 - 1.5
454,552 + 1.8
454,566 + -0.5
454,570 + 0.1
454,601 + -1.3
454,606 + 0.4
454,611 - 0.6
454,627 + -0.9
454,639 + -1.7
454,641 + 0.5
454,642 + 0.5
454,642 - 0.8
454,642 - 0.7
454,643 - 0.2
454,655 - 0.5
454,659 + 0.7
454,661 - -2.5
454,662 - 1.3
454,677 + 0.0
454,677 + 1.0
454,678 - 0.8
454,679 + 1.1
454,680 - -0.3
454,681 + 1.0
454,694 - 1.3
454,694 - -2.5
454,696 - 0.1
454,707 - -0.3
454,709 - -3.2
454,713 - 0.2
454,717 - 0.6