Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3153

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3152: 11520 - Interpro PET assembly of cytochrome c oxidase, mitochondrial, at 438780 to 439151 11520 mRNA_3153: 11521 - BLAST serine proline rich protein [Moniliophthora rorer..., at 439382 to 440661 11521 mRNA_3154: 11522 - K14831 MAK16 protein MAK16, at 440957 to 442475 11522

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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438,414 - 0.1
438,426 - -1.8
438,436 - -0.9
438,446 + 0.2
438,469 - -1.0
438,471 - 2.6
438,472 + -0.4
438,478 - 0.5
438,503 + 0.1
438,542 - 0.4
438,552 + -0.3
438,560 - -1.9
438,603 - -2.3
438,612 - -0.8
438,614 - -1.8
438,629 + -2.3
438,643 + 0.4
438,645 + -0.6
438,655 - -0.7
438,662 - -2.5
438,778 - 1.3
438,784 + -0.9
438,844 - 11520 mRNA_3152 0.17 0.8
438,898 + 11520 mRNA_3152 0.32 -2.7
438,920 + 11520 mRNA_3152 0.38 -0.3
438,952 - 11520 mRNA_3152 0.46 1.1
439,046 - 11520 mRNA_3152 0.72 0.8
439,067 - 11520 mRNA_3152 0.77 0.7
439,080 + 11520 mRNA_3152 0.81 -0.7
439,089 + 11520 mRNA_3152 0.83 -1.6
439,199 - 0.6
439,200 + 1.8
439,201 - 0.6
439,202 + -0.8
439,203 - -0.6
439,203 + 0.5
439,204 + 0.8
439,344 - 1.4
439,350 + 1.3
439,485 + -0.3
439,645 + 11521 mRNA_3153 0.21 -0.3
439,674 + 11521 mRNA_3153 0.23 -1.1
439,785 - 11521 mRNA_3153 0.31 0.2
439,787 + 11521 mRNA_3153 0.32 1.6
439,792 - 11521 mRNA_3153 0.32 -0.4
440,096 + 11521 mRNA_3153 0.56 -0.9
440,332 - 11521 mRNA_3153 0.74 0.3
440,340 + 11521 mRNA_3153 0.75 -0.3
440,495 - 11521 mRNA_3153 0.87 -1.4
440,508 + 11521 mRNA_3153 0.88 0.6
440,639 - 0.7
440,692 + -1.6
440,928 - -1.2
440,945 - 1.3
440,973 - 0.2
441,230 - 11522 mRNA_3154 0.18 0.9
441,364 + 11522 mRNA_3154 0.27 -1.7
441,385 + 11522 mRNA_3154 0.28 -0.0
441,487 - 11522 mRNA_3154 0.35 0.6
441,546 - 11522 mRNA_3154 0.39 0.2