Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3146

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3145: 11513 - HMMPfam-haloacid dehalogenase-like hydrolase-PF08282,SUPERFAMILY--SSF56784,TIGRFAM-Cof-subfamily Cof-like hydrolase-TIGR00099,TIGRFAM-HAD-SF-IIB HAD hydrolase, family IIB-TIGR01484, at 422365 to 423654 11513 mRNA_3146: 11514 - K11273 DDX11, CHL1, CTF1 chromosome transmission fidelity protein 1, at 423793 to 427312 11514 mRNA_3147: 11515 - Hypothetical Protein, at 427660 to 428214 11515

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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422,923 - 11513 mRNA_3145 0.43 -1.1
423,146 + 11513 mRNA_3145 0.61 0.0
423,160 - 11513 mRNA_3145 0.62 0.4
423,386 + 11513 mRNA_3145 0.79 0.3
423,418 - 11513 mRNA_3145 0.82 -2.4
423,449 - 11513 mRNA_3145 0.84 2.9
423,553 - 0.3
423,553 + -0.0
423,587 - 1.1
423,640 - -0.1
423,685 + 0.5
423,708 + 0.3
423,963 - -0.9
424,268 - 11514 mRNA_3146 0.13 -0.0
424,452 + 11514 mRNA_3146 0.19 0.9
424,455 - 11514 mRNA_3146 0.19 -0.3
424,517 + 11514 mRNA_3146 0.21 1.2
424,562 - 11514 mRNA_3146 0.22 -0.4
424,713 + 11514 mRNA_3146 0.26 -0.2
424,714 + 11514 mRNA_3146 0.26 0.5
424,805 + 11514 mRNA_3146 0.29 0.7
424,844 + 11514 mRNA_3146 0.30 -0.9
424,847 - 11514 mRNA_3146 0.30 0.3
425,001 - 11514 mRNA_3146 0.34 -0.1
425,158 - 11514 mRNA_3146 0.39 1.7
425,188 - 11514 mRNA_3146 0.40 -1.7
425,191 - 11514 mRNA_3146 0.40 1.0
425,196 - 11514 mRNA_3146 0.40 0.9
425,203 + 11514 mRNA_3146 0.40 -1.3
425,203 + 11514 mRNA_3146 0.40 0.2
425,203 + 11514 mRNA_3146 0.40 -1.1
425,282 - 11514 mRNA_3146 0.42 0.7
425,286 - 11514 mRNA_3146 0.42 -0.5
425,573 + 11514 mRNA_3146 0.51 -1.1
425,575 - 11514 mRNA_3146 0.51 0.3
425,898 - 11514 mRNA_3146 0.60 -0.3
426,037 + 11514 mRNA_3146 0.64 1.2
426,058 - 11514 mRNA_3146 0.64 0.5
426,323 - 11514 mRNA_3146 0.72 -1.3
426,639 - 11514 mRNA_3146 0.81 -0.2
426,921 - 11514 mRNA_3146 0.89 -0.4
426,952 + 11514 mRNA_3146 0.90 -1.2
427,071 + -0.7
427,081 - -0.1
427,083 + 1.4
427,205 - 0.2
427,205 - 0.7
427,210 - -2.0
427,214 + -0.3
427,226 + 0.1
427,228 - -2.1
427,237 + 0.9
427,238 + 0.0
427,390 - -2.2
427,392 - 1.8
427,399 + -0.7
427,404 + -1.5
427,406 - 0.8
427,412 - 0.6
427,413 + 2.2
427,422 - 0.7
427,424 + 1.2
427,520 - 2.0
427,525 - 0.0
427,537 + 0.6
427,669 + -0.4
427,682 + -1.4
427,713 - 0.1
427,793 + 11515 mRNA_3147 0.24 -1.4
427,812 - 11515 mRNA_3147 0.27 -0.5
428,009 - 11515 mRNA_3147 0.63 0.1
428,074 - 11515 mRNA_3147 0.75 1.4
428,288 + -1.1