Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3145

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3144: 11512 - Hypothetical Protein, at 417526 to 421368 11512 mRNA_3145: 11513 - HMMPfam-haloacid dehalogenase-like hydrolase-PF08282,SUPERFAMILY--SSF56784,TIGRFAM-Cof-subfamily Cof-like hydrolase-TIGR00099,TIGRFAM-HAD-SF-IIB HAD hydrolase, family IIB-TIGR01484, at 422365 to 423654 11513 mRNA_3146: 11514 - K11273 DDX11, CHL1, CTF1 chromosome transmission fidelity protein 1, at 423793 to 427312 11514

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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421,438 - 0.5
421,469 - -0.9
421,470 - -0.5
421,476 + 0.2
421,478 - 0.7
421,480 + -1.5
421,494 - 0.9
421,526 - -1.2
421,594 + 0.2
421,596 - -0.8
421,603 - -0.3
421,614 + 0.2
421,617 - -2.3
421,618 + -0.2
421,622 - 0.6
421,622 - 2.7
421,624 - 0.8
421,634 - -0.6
421,652 + -0.1
421,656 + 0.5
421,658 + 2.2
421,660 + 0.3
421,667 + 0.6
421,676 + -0.4
421,717 - -0.6
421,730 + 0.0
421,730 - -0.1
421,732 - -1.2
421,735 + -0.8
421,737 - -0.0
421,738 + 1.4
421,739 + 0.4
421,741 - 0.5
421,747 - 0.4
421,753 - 3.4
421,758 + -0.8
421,759 + -0.3
421,759 + -0.3
421,760 + -0.3
421,760 + 0.0
421,760 + -2.4
421,762 - -0.9
421,763 - 0.8
421,764 - 2.0
421,765 + -0.0
421,766 + 0.0
421,768 + -0.8
421,776 + 0.1
421,779 + -1.9
421,781 + -0.2
421,784 + 0.5
421,793 + -1.9
421,796 - 0.0
421,798 - 0.1
421,798 - -0.5
421,806 - 2.0
421,806 - -0.1
421,811 + 0.8
421,815 + 1.7
421,825 + 1.1
421,833 - -0.5
421,940 + -0.3
421,942 - -0.5
421,956 - -0.1
421,956 - 0.4
421,959 - -0.7
421,963 + -1.3
421,969 - -0.5
421,972 - -1.0
421,981 - 0.5
421,984 - 0.0
421,985 - -0.9
421,997 - -0.9
421,998 + -2.7
421,999 + -1.5
422,002 + -2.6
422,018 - -0.5
422,020 + -0.1
422,020 - -0.5
422,031 + -0.2
422,031 + -0.0
422,040 - -0.9
422,042 + -0.9
422,043 - 0.1
422,044 - -0.0
422,048 + -0.7
422,050 + 0.7
422,051 + -0.9
422,052 + 1.4
422,066 - 0.0
422,072 + 1.0
422,072 - 0.4
422,074 - 1.3
422,075 - 0.5
422,085 + 1.2
422,113 - -1.4
422,132 + 1.9
422,145 + -0.2
422,163 + -0.6
422,165 - 1.0
422,174 + 2.0
422,174 + -0.6
422,188 - 1.7
422,195 - 1.7
422,205 + 0.3
422,207 + 2.1
422,212 - -0.4
422,214 + -0.5
422,221 - 0.2
422,223 - -0.7
422,237 - -0.0
422,255 - -0.2
422,271 + 2.5
422,276 + 1.1
422,280 + 0.4
422,314 - -0.0
422,351 - -0.2
422,364 - -0.4
422,382 + 1.0
422,513 + 11513 mRNA_3145 0.11 -1.3
422,517 + 11513 mRNA_3145 0.12 -1.4
422,525 + 11513 mRNA_3145 0.12 -0.7
422,527 - 11513 mRNA_3145 0.13 -0.2
422,529 + 11513 mRNA_3145 0.13 1.5
422,538 + 11513 mRNA_3145 0.13 1.1
422,616 - 11513 mRNA_3145 0.19 -0.1
422,642 + 11513 mRNA_3145 0.21 -1.9
422,660 + 11513 mRNA_3145 0.23 -0.1
422,660 - 11513 mRNA_3145 0.23 -0.4
422,662 + 11513 mRNA_3145 0.23 0.0
422,689 - 11513 mRNA_3145 0.25 -0.1
422,713 + 11513 mRNA_3145 0.27 -0.3
422,778 - 11513 mRNA_3145 0.32 0.1
422,923 - 11513 mRNA_3145 0.43 -1.1
423,146 + 11513 mRNA_3145 0.61 0.0
423,160 - 11513 mRNA_3145 0.62 0.4
423,386 + 11513 mRNA_3145 0.79 0.3
423,418 - 11513 mRNA_3145 0.82 -2.4
423,449 - 11513 mRNA_3145 0.84 2.9
423,553 - 0.3
423,553 + -0.0
423,587 - 1.1
423,640 - -0.1
423,685 + 0.5
423,708 + 0.3
423,963 - -0.9
424,268 - 11514 mRNA_3146 0.13 -0.0
424,452 + 11514 mRNA_3146 0.19 0.9
424,455 - 11514 mRNA_3146 0.19 -0.3
424,517 + 11514 mRNA_3146 0.21 1.2
424,562 - 11514 mRNA_3146 0.22 -0.4