Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3144

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3143: 11511 - K10133 TP53I3 tumor protein p53-inducible protein 3, at 415939 to 417358 11511 mRNA_3144: 11512 - Hypothetical Protein, at 417526 to 421368 11512 mRNA_3145: 11513 - HMMPfam-haloacid dehalogenase-like hydrolase-PF08282,SUPERFAMILY--SSF56784,TIGRFAM-Cof-subfamily Cof-like hydrolase-TIGR00099,TIGRFAM-HAD-SF-IIB HAD hydrolase, family IIB-TIGR01484, at 422365 to 423654 11513

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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416,634 - 11511 mRNA_3143 0.49 1.3
416,758 - 11511 mRNA_3143 0.58 -1.7
416,791 + 11511 mRNA_3143 0.60 -0.8
416,807 + 11511 mRNA_3143 0.61 2.2
416,884 - 11511 mRNA_3143 0.67 0.0
416,914 - 11511 mRNA_3143 0.69 -2.3
416,955 + 11511 mRNA_3143 0.72 -0.3
417,060 - 11511 mRNA_3143 0.79 0.8
417,093 + 11511 mRNA_3143 0.81 -0.7
417,095 + 11511 mRNA_3143 0.81 -1.6
417,197 - 11511 mRNA_3143 0.89 0.6
417,214 + 11511 mRNA_3143 0.90 1.1
417,228 - 2.2
417,239 + -0.9
417,250 - -0.3
417,378 - 0.4
417,383 - -0.5
417,385 + -0.1
417,392 - -0.5
417,392 + -2.4
417,395 - -0.5
417,396 - 1.2
417,396 - -0.1
417,398 - -2.0
417,402 - 0.1
417,405 + -1.0
417,423 + -0.4
417,427 + -0.5
417,431 - -0.3
417,436 - 1.1
417,446 - 0.5
417,449 - 0.3
417,454 + -0.4
417,462 + -0.6
417,463 + 0.3
417,478 + -0.5
417,495 - 0.4
417,557 + -1.8
417,576 + -0.6
417,607 - -0.3
417,609 + 1.4
417,616 - -0.5
417,776 - -0.1
417,777 + 0.1
417,955 + 11512 mRNA_3144 0.11 1.3
418,097 - 11512 mRNA_3144 0.15 -1.6
418,476 - 11512 mRNA_3144 0.25 0.6
419,024 - 11512 mRNA_3144 0.39 -1.0
419,439 + 11512 mRNA_3144 0.50 -0.2
420,002 + 11512 mRNA_3144 0.64 0.9
420,178 - 11512 mRNA_3144 0.69 1.0
420,278 - 11512 mRNA_3144 0.72 0.0
420,296 - 11512 mRNA_3144 0.72 -1.6
420,432 + 11512 mRNA_3144 0.76 1.1
420,644 - 11512 mRNA_3144 0.81 -0.6
420,740 + 11512 mRNA_3144 0.84 -0.4
420,845 - 11512 mRNA_3144 0.86 0.1
420,911 - 11512 mRNA_3144 0.88 0.8
420,952 + 11512 mRNA_3144 0.89 0.2
421,046 - -1.3
421,054 + -0.1
421,068 + 0.7
421,164 - 0.3
421,329 - -0.3
421,438 - 0.5
421,469 - -0.9
421,470 - -0.5
421,476 + 0.2
421,478 - 0.7
421,480 + -1.5
421,494 - 0.9
421,526 - -1.2
421,594 + 0.2
421,596 - -0.8
421,603 - -0.3
421,614 + 0.2
421,617 - -2.3
421,618 + -0.2
421,622 - 0.6
421,622 - 2.7
421,624 - 0.8
421,634 - -0.6
421,652 + -0.1
421,656 + 0.5
421,658 + 2.2
421,660 + 0.3
421,667 + 0.6
421,676 + -0.4
421,717 - -0.6
421,730 + 0.0
421,730 - -0.1
421,732 - -1.2
421,735 + -0.8
421,737 - -0.0
421,738 + 1.4
421,739 + 0.4
421,741 - 0.5
421,747 - 0.4
421,753 - 3.4
421,758 + -0.8
421,759 + -0.3
421,759 + -0.3
421,760 + -0.3
421,760 + 0.0
421,760 + -2.4
421,762 - -0.9
421,763 - 0.8
421,764 - 2.0
421,765 + -0.0
421,766 + 0.0
421,768 + -0.8
421,776 + 0.1
421,779 + -1.9
421,781 + -0.2
421,784 + 0.5
421,793 + -1.9
421,796 - 0.0
421,798 - 0.1
421,798 - -0.5
421,806 - 2.0
421,806 - -0.1
421,811 + 0.8
421,815 + 1.7
421,825 + 1.1
421,833 - -0.5
421,940 + -0.3
421,942 - -0.5
421,956 - -0.1
421,956 - 0.4
421,959 - -0.7
421,963 + -1.3
421,969 - -0.5
421,972 - -1.0
421,981 - 0.5
421,984 - 0.0
421,985 - -0.9
421,997 - -0.9
421,998 + -2.7
421,999 + -1.5
422,002 + -2.6
422,018 - -0.5
422,020 + -0.1
422,020 - -0.5
422,031 + -0.2
422,031 + -0.0
422,040 - -0.9
422,042 + -0.9
422,043 - 0.1
422,044 - -0.0
422,048 + -0.7
422,050 + 0.7
422,051 + -0.9
422,052 + 1.4
422,066 - 0.0
422,072 + 1.0
422,072 - 0.4
422,074 - 1.3
422,075 - 0.5
422,085 + 1.2
422,113 - -1.4
422,132 + 1.9
422,145 + -0.2
422,163 + -0.6
422,165 - 1.0
422,174 + 2.0
422,174 + -0.6
422,188 - 1.7
422,195 - 1.7
422,205 + 0.3
422,207 + 2.1
422,212 - -0.4
422,214 + -0.5
422,221 - 0.2
422,223 - -0.7
422,237 - -0.0
422,255 - -0.2
422,271 + 2.5
422,276 + 1.1
422,280 + 0.4
422,314 - -0.0
422,351 - -0.2
422,364 - -0.4