Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3141

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3140: 11508 - BLAST peptide release factor [Melanopsichium pennsylvanicum 4], at 411347 to 412227 11508 mRNA_3141: 11509 - HMMPfam-Proline-rich nuclear receptor coactivator-PF15365, at 412291 to 413595 11509

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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411,293 - -0.7
411,293 + -2.3
411,295 + 2.4
411,301 - 0.9
411,303 + -0.3
411,310 + 0.0
411,317 - 0.2
411,333 + -0.1
411,381 - 0.2
411,394 + 0.5
411,422 - 0.6
411,435 - 11508 mRNA_3140 0.10 -1.8
411,435 - 11508 mRNA_3140 0.10 -0.2
411,436 + 11508 mRNA_3140 0.10 2.9
411,437 + 11508 mRNA_3140 0.10 0.1
411,449 - 11508 mRNA_3140 0.12 1.1
411,454 + 11508 mRNA_3140 0.12 -0.5
411,588 - 11508 mRNA_3140 0.27 -1.2
411,595 - 11508 mRNA_3140 0.28 -0.7
411,745 + 11508 mRNA_3140 0.45 1.4
411,770 - 11508 mRNA_3140 0.48 0.3
411,815 + 11508 mRNA_3140 0.53 0.3
411,869 + 11508 mRNA_3140 0.59 0.9
411,872 + 11508 mRNA_3140 0.60 0.1
411,881 + 11508 mRNA_3140 0.61 -0.2
411,883 - 11508 mRNA_3140 0.61 -0.1
411,883 + 11508 mRNA_3140 0.61 -1.4
411,900 + 11508 mRNA_3140 0.63 -0.5
411,904 - 11508 mRNA_3140 0.63 -1.8
412,004 + 11508 mRNA_3140 0.75 0.2
412,011 - 11508 mRNA_3140 0.75 0.2
412,022 - 11508 mRNA_3140 0.77 -2.5
412,036 + 11508 mRNA_3140 0.78 -0.2
412,068 + 11508 mRNA_3140 0.82 -0.5
412,138 - 11508 mRNA_3140 0.90 1.4
412,163 - 0.3
412,163 - -0.7
412,163 - 1.4
412,177 + 1.7
412,177 + -0.1
412,183 - -0.1
412,186 - -0.6
412,305 - -0.8
412,315 - 0.0
412,317 - -1.0
412,323 + 0.0
412,351 - -0.0
412,352 + -0.5
412,371 + -1.0
412,452 + 11509 mRNA_3141 0.12 0.6
412,454 - 11509 mRNA_3141 0.12 0.7
412,494 - 11509 mRNA_3141 0.16 1.0
412,611 + 11509 mRNA_3141 0.25 -0.4
412,611 - 11509 mRNA_3141 0.25 1.2
412,611 + 11509 mRNA_3141 0.25 0.9
412,636 - 11509 mRNA_3141 0.26 1.3
412,638 + 11509 mRNA_3141 0.27 -1.5
412,640 - 11509 mRNA_3141 0.27 2.1
412,641 - 11509 mRNA_3141 0.27 -0.4
412,641 + 11509 mRNA_3141 0.27 0.1
412,650 - 11509 mRNA_3141 0.28 0.1
412,770 + 11509 mRNA_3141 0.37 -0.5
412,777 - 11509 mRNA_3141 0.37 -1.0
412,782 - 11509 mRNA_3141 0.38 -0.6
412,787 + 11509 mRNA_3141 0.38 -1.4
412,791 + 11509 mRNA_3141 0.38 -0.7
412,793 - 11509 mRNA_3141 0.38 2.1
412,797 + 11509 mRNA_3141 0.39 0.6
412,802 - 11509 mRNA_3141 0.39 0.9
412,803 - 11509 mRNA_3141 0.39 0.2
412,816 + 11509 mRNA_3141 0.40 -0.1
412,817 + 11509 mRNA_3141 0.40 0.7
412,953 + 11509 mRNA_3141 0.51 -2.2
412,957 - 11509 mRNA_3141 0.51 -0.3
413,085 + 11509 mRNA_3141 0.61 0.4
413,237 - 11509 mRNA_3141 0.72 -0.4
413,382 - 11509 mRNA_3141 0.84 0.4
413,386 - 11509 mRNA_3141 0.84 0.1
413,388 + 11509 mRNA_3141 0.84 2.7
413,528 - -0.5
413,533 + -1.0
413,743 + 0.1
413,838 - 0.3
413,845 + 1.8
414,131 + -1.0
414,259 - 0.7
414,265 - -0.3
414,390 - -0.2
414,391 + 0.2
414,394 - 0.1
414,402 + 0.3
414,411 - -0.1
414,417 + 1.6
414,431 + 0.0
414,437 + 0.2
414,438 - -0.7
414,442 - -0.1
414,444 - -2.1
414,480 - 0.3
414,488 + 1.6
414,488 + -0.2
414,493 + -0.4
414,501 - 0.7
414,509 + 0.2
414,529 - -0.5
414,529 - 0.8
414,529 - 0.0
414,558 - -0.2
414,571 - -0.8
414,571 + 0.2
414,571 - 1.4
414,578 + 1.8
414,578 + -0.1
414,578 + -0.1
414,580 - 0.2
414,581 + 1.4
414,583 - 1.1
414,590 - 0.2