Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3139

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3138: 11506 - K13106 BUD13, CWC26 pre-mRNA-splicing factor CWC26, at 408830 to 410030 11506 mRNA_3139: 11507 - HMMPfam-Acetyltransferase (GNAT) domain-PF13302,SUPERFAMILY--SSF55729, at 410271 to 410837 11507 mRNA_3140: 11508 - BLAST peptide release factor [Melanopsichium pennsylvanicum 4], at 411347 to 412227 11508

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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409,418 + 11506 mRNA_3138 0.49 0.5
409,533 - 11506 mRNA_3138 0.59 -0.1
409,674 - 11506 mRNA_3138 0.70 -0.5
409,714 - 11506 mRNA_3138 0.74 -0.5
409,887 + 11506 mRNA_3138 0.88 0.8
409,919 + 1.1
409,981 + 1.2
409,982 - -0.9
410,015 - 0.3
410,053 - 1.2
410,116 + -3.1
410,149 + -0.8
410,325 + -0.4
410,342 + 11507 mRNA_3139 0.13 1.4
410,423 - 11507 mRNA_3139 0.27 0.7
410,460 + 11507 mRNA_3139 0.33 -0.2
410,477 - 11507 mRNA_3139 0.36 0.1
410,560 + 11507 mRNA_3139 0.51 -0.3
410,576 + 11507 mRNA_3139 0.54 1.2
410,576 + 11507 mRNA_3139 0.54 0.9
410,587 + 11507 mRNA_3139 0.56 -1.7
410,593 + 11507 mRNA_3139 0.57 -0.0
410,644 - 11507 mRNA_3139 0.66 -0.6
410,720 + 11507 mRNA_3139 0.79 -0.4
410,758 - 11507 mRNA_3139 0.86 1.3
410,795 + 0.8
410,798 - -1.0
410,855 + -1.0
410,860 - -0.9
410,866 - 0.0
410,927 + -0.1
410,955 - -0.6
410,963 - 0.5
410,978 - -0.5
410,998 + 0.2
411,007 + 1.2
411,012 - 2.6
411,019 + 0.5
411,021 + 0.4
411,021 + -0.1
411,032 - 0.0
411,045 - -2.3
411,076 + -0.3
411,102 + -0.4
411,118 - -1.2
411,122 - 0.5
411,130 - -1.6
411,141 + 0.9
411,147 + 0.1
411,147 + -0.2
411,155 - -0.4
411,156 - 0.8
411,157 + 0.1
411,163 - -0.3
411,165 - 2.1
411,166 + 3.1
411,168 - 0.2
411,175 + -1.5
411,178 - 0.2
411,180 - -0.2
411,183 + 3.5
411,192 + -1.8
411,193 - 0.5
411,194 - 0.4
411,211 - -0.3
411,218 - -1.2
411,218 - 0.3
411,220 + 0.3
411,231 + 0.5
411,232 - 0.8
411,236 + 0.2
411,237 + -0.2
411,238 + 0.1
411,261 + 0.4
411,262 + -0.1
411,274 + -0.4
411,275 + 0.0
411,276 + -0.2
411,293 - -0.7
411,293 + -2.3
411,295 + 2.4
411,301 - 0.9
411,303 + -0.3
411,310 + 0.0
411,317 - 0.2
411,333 + -0.1
411,381 - 0.2
411,394 + 0.5
411,422 - 0.6
411,435 - 11508 mRNA_3140 0.10 -1.8
411,435 - 11508 mRNA_3140 0.10 -0.2
411,436 + 11508 mRNA_3140 0.10 2.9
411,437 + 11508 mRNA_3140 0.10 0.1
411,449 - 11508 mRNA_3140 0.12 1.1
411,454 + 11508 mRNA_3140 0.12 -0.5
411,588 - 11508 mRNA_3140 0.27 -1.2
411,595 - 11508 mRNA_3140 0.28 -0.7
411,745 + 11508 mRNA_3140 0.45 1.4
411,770 - 11508 mRNA_3140 0.48 0.3
411,815 + 11508 mRNA_3140 0.53 0.3