Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3137

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3136: 11504 - KOG2615 Permease of the major facilitator superfamily, at 401491 to 407249 11504 mRNA_3137: 11505 - SUPERFAMILY--SSF48208, at 407732 to 408630 11505 mRNA_3138: 11506 - K13106 BUD13, CWC26 pre-mRNA-splicing factor CWC26, at 408830 to 410030 11506

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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406,739 - -1.2
406,752 + -0.9
406,758 - -1.2
406,978 - -1.4
406,979 - -1.5
406,981 - 0.9
407,027 - -3.2
407,148 + -0.2
407,294 - 1.5
407,315 + -0.2
407,451 + 1.0
407,529 + -0.2
407,554 - 0.1
407,601 - 0.1
407,652 + 0.5
407,760 + 1.0
407,796 + 0.5
407,807 - -1.0
407,871 + 11505 mRNA_3137 0.15 0.2
407,875 - 11505 mRNA_3137 0.16 1.3
407,932 + 11505 mRNA_3137 0.22 1.4
408,220 - 11505 mRNA_3137 0.54 0.8
408,266 + 11505 mRNA_3137 0.59 -0.7
408,267 - 11505 mRNA_3137 0.60 -1.8
408,311 - 11505 mRNA_3137 0.64 -1.1
408,357 - 11505 mRNA_3137 0.70 1.7
408,510 - 11505 mRNA_3137 0.87 -0.2
408,556 + -0.6
408,566 + -1.6
408,638 - 0.3
408,652 - 1.5
408,665 + -0.8
408,669 - -0.7
408,669 - 0.5
408,673 - 0.0
408,676 - 0.1
408,681 - -1.1
408,782 + -0.3
408,813 - -0.6
408,948 + 0.7
408,962 - 11506 mRNA_3138 0.11 -1.1
408,971 + 11506 mRNA_3138 0.12 0.0
408,971 - 11506 mRNA_3138 0.12 0.2
408,976 - 11506 mRNA_3138 0.12 -0.1
409,061 - 11506 mRNA_3138 0.19 -1.5
409,081 - 11506 mRNA_3138 0.21 0.4
409,105 - 11506 mRNA_3138 0.23 -0.1
409,107 + 11506 mRNA_3138 0.23 -0.1
409,109 - 11506 mRNA_3138 0.23 1.4
409,134 + 11506 mRNA_3138 0.25 -1.5
409,418 + 11506 mRNA_3138 0.49 0.5
409,533 - 11506 mRNA_3138 0.59 -0.1