Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3136

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3136: 11504 - KOG2615 Permease of the major facilitator superfamily, at 401491 to 407249 11504 mRNA_3137: 11505 - SUPERFAMILY--SSF48208, at 407732 to 408630 11505

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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400,526 + 0.3
400,526 + 1.4
400,526 - 0.7
400,643 + -0.7
400,852 + 1.7
400,855 - 1.0
400,912 + -0.2
400,946 + -0.6
400,964 + -1.7
401,094 - 0.9
401,098 + 0.1
401,215 - -0.9
401,227 - -1.5
401,227 - 0.3
401,235 + -1.3
401,251 + -1.5
401,258 + -0.6
401,259 + 0.2
401,390 - -1.3
401,396 - -0.0
401,503 - 1.4
401,506 - -1.0
401,531 + 1.0
401,669 - 0.2
401,822 - -2.1
401,843 - -0.1
401,972 - -0.2
402,110 - 11504 mRNA_3136 0.11 0.4
402,551 + 11504 mRNA_3136 0.18 0.5
402,565 - 11504 mRNA_3136 0.19 -0.2
402,568 - 11504 mRNA_3136 0.19 -0.1
402,724 + 11504 mRNA_3136 0.21 -0.2
402,889 - 11504 mRNA_3136 0.24 0.7
403,155 - 11504 mRNA_3136 0.29 -1.3
403,181 + 11504 mRNA_3136 0.29 0.6
403,254 - 11504 mRNA_3136 0.31 -0.8
403,309 + 11504 mRNA_3136 0.32 0.5
403,435 - 11504 mRNA_3136 0.34 -0.1
403,505 + 11504 mRNA_3136 0.35 2.4
403,550 - 11504 mRNA_3136 0.36 -1.2
403,554 - 11504 mRNA_3136 0.36 0.0
403,559 - 11504 mRNA_3136 0.36 -2.2
403,582 - 11504 mRNA_3136 0.36 -0.6
403,589 - 11504 mRNA_3136 0.36 1.3
403,592 + 11504 mRNA_3136 0.36 -1.6
403,593 + 11504 mRNA_3136 0.36 -0.9
403,601 - 11504 mRNA_3136 0.37 -1.6
403,703 - 11504 mRNA_3136 0.38 0.6
403,721 + 11504 mRNA_3136 0.39 0.7
403,723 - 11504 mRNA_3136 0.39 -0.5
403,739 + 11504 mRNA_3136 0.39 -0.7
403,743 - 11504 mRNA_3136 0.39 -0.8
403,743 + 11504 mRNA_3136 0.39 0.0
403,748 + 11504 mRNA_3136 0.39 0.2
403,751 - 11504 mRNA_3136 0.39 -0.2
403,752 - 11504 mRNA_3136 0.39 -2.9
403,752 + 11504 mRNA_3136 0.39 2.4
403,753 + 11504 mRNA_3136 0.39 1.1
403,755 - 11504 mRNA_3136 0.39 0.7
403,755 + 11504 mRNA_3136 0.39 -0.8
403,757 - 11504 mRNA_3136 0.39 0.2
403,880 + 11504 mRNA_3136 0.41 1.6
403,894 - 11504 mRNA_3136 0.42 -0.5
403,897 + 11504 mRNA_3136 0.42 -2.5
403,898 - 11504 mRNA_3136 0.42 -0.5
404,026 - 11504 mRNA_3136 0.44 0.3
404,032 + 11504 mRNA_3136 0.44 0.4
404,037 + 11504 mRNA_3136 0.44 2.1
404,062 - 11504 mRNA_3136 0.45 0.1
404,063 + 11504 mRNA_3136 0.45 -0.4
404,064 - 11504 mRNA_3136 0.45 0.2
404,139 - 11504 mRNA_3136 0.46 2.8
404,166 - 11504 mRNA_3136 0.46 -0.7
404,183 + 11504 mRNA_3136 0.47 -0.8
404,208 + 11504 mRNA_3136 0.47 0.3
404,212 - 11504 mRNA_3136 0.47 0.4
404,367 + 11504 mRNA_3136 0.50 0.5
404,469 + 11504 mRNA_3136 0.52 1.2
404,635 - 11504 mRNA_3136 0.55 -0.3
404,682 - 11504 mRNA_3136 0.55 -0.6
404,773 + 11504 mRNA_3136 0.57 0.1
404,792 - 11504 mRNA_3136 0.57 -0.3
404,799 + 11504 mRNA_3136 0.57 0.5
404,800 + 11504 mRNA_3136 0.57 -0.2
405,064 + 11504 mRNA_3136 0.62 1.0
405,214 - 11504 mRNA_3136 0.65 0.9
405,249 - 11504 mRNA_3136 0.65 0.3
405,358 + 11504 mRNA_3136 0.67 -0.4
405,377 - 11504 mRNA_3136 0.67 0.4
405,378 - 11504 mRNA_3136 0.67 -0.2
405,397 - 11504 mRNA_3136 0.68 -0.2
405,421 - 11504 mRNA_3136 0.68 -0.6
405,835 + 11504 mRNA_3136 0.75 -0.5
405,973 + 11504 mRNA_3136 0.78 -0.9
406,088 - 11504 mRNA_3136 0.80 -1.3
406,163 - 11504 mRNA_3136 0.81 0.4
406,216 + 11504 mRNA_3136 0.82 0.8
406,255 + 11504 mRNA_3136 0.83 1.4
406,309 - 11504 mRNA_3136 0.84 0.8
406,315 - 11504 mRNA_3136 0.84 0.6
406,397 - 11504 mRNA_3136 0.85 0.3
406,471 - 11504 mRNA_3136 0.86 -1.9
406,545 - 11504 mRNA_3136 0.88 0.5
406,717 - 1.0
406,739 - -1.2
406,752 + -0.9
406,758 - -1.2
406,978 - -1.4
406,979 - -1.5
406,981 - 0.9
407,027 - -3.2
407,148 + -0.2
407,294 - 1.5
407,315 + -0.2
407,451 + 1.0
407,529 + -0.2
407,554 - 0.1
407,601 - 0.1
407,652 + 0.5
407,760 + 1.0
407,796 + 0.5
407,807 - -1.0
407,871 + 11505 mRNA_3137 0.15 0.2
407,875 - 11505 mRNA_3137 0.16 1.3
407,932 + 11505 mRNA_3137 0.22 1.4
408,220 - 11505 mRNA_3137 0.54 0.8