Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3135

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3134: 11502 - K17278 PGRMC1_2 membrane-associated progesterone receptor component, at 397818 to 398852 11502 mRNA_3135: 11503 - HMMPfam-Alpha/beta hydrolase family-PF12695,SUPERFAMILY--SSF53474, at 399522 to 400301 11503

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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398,594 + 11502 mRNA_3134 0.75 -1.1
398,598 + 11502 mRNA_3134 0.75 0.9
398,601 + 11502 mRNA_3134 0.76 0.7
398,606 - 11502 mRNA_3134 0.76 0.9
398,607 + 11502 mRNA_3134 0.76 -0.5
398,607 + 11502 mRNA_3134 0.76 -1.2
398,729 - 11502 mRNA_3134 0.88 -0.1
398,734 - 11502 mRNA_3134 0.89 0.2
398,749 - 1.4
398,760 + -0.4
398,760 - 1.5
398,774 - -0.2
398,843 - 0.5
398,879 + -1.2
398,889 - 0.4
398,897 + 1.2
398,907 + -0.7
398,910 + 0.7
398,913 + -0.6
398,942 + -1.3
399,008 - 0.2
399,042 - -1.0
399,043 + -0.3
399,057 + 0.1
399,065 + 0.1
399,083 - 0.0
399,160 - 0.1
399,191 - 1.8
399,230 + 1.0
399,268 - -0.4
399,324 + 1.2
399,365 + -0.1
399,370 + 1.0
399,475 - -2.8
399,663 - 11503 mRNA_3135 0.18 0.1
399,730 - 11503 mRNA_3135 0.27 1.1
399,939 - 11503 mRNA_3135 0.53 0.6
400,194 - 11503 mRNA_3135 0.86 0.1
400,197 + 11503 mRNA_3135 0.87 -2.0
400,206 - 11503 mRNA_3135 0.88 1.3
400,250 - 0.5
400,405 - 1.9
400,407 + 1.4
400,526 + 0.3
400,526 + 1.4
400,526 - 0.7
400,643 + -0.7
400,852 + 1.7
400,855 - 1.0
400,912 + -0.2
400,946 + -0.6
400,964 + -1.7
401,094 - 0.9
401,098 + 0.1
401,215 - -0.9
401,227 - -1.5
401,227 - 0.3
401,235 + -1.3
401,251 + -1.5
401,258 + -0.6
401,259 + 0.2