Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3128

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3127: 11495 - K11984 SART1, HAF, SNU66 U4/U6.U5 tri-snRNP-associated protein 1, at 381334 to 384253 11495 mRNA_3128: 11496 - BLAST protein transporter [Pseudozyma hubeiensis SY62], at 384343 to 385202 11496 mRNA_3129: 11497 - KOG4090 Uncharacterized conserved protein, at 385430 to 386354 11497

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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383,425 + 11495 mRNA_3127 0.72 -0.8
383,455 + 11495 mRNA_3127 0.73 1.2
383,585 - 11495 mRNA_3127 0.77 -0.1
383,599 - 11495 mRNA_3127 0.78 0.7
383,613 + 11495 mRNA_3127 0.78 0.3
383,762 - 11495 mRNA_3127 0.83 -1.3
384,060 + -0.5
384,122 - -1.5
384,271 + -0.5
384,348 + -0.1
384,349 - 0.8
384,352 + 0.5
384,442 + 11496 mRNA_3128 0.12 -0.4
384,476 - 11496 mRNA_3128 0.15 -0.0
384,485 - 11496 mRNA_3128 0.17 -2.9
384,508 - 11496 mRNA_3128 0.19 0.9
384,531 + 11496 mRNA_3128 0.22 2.2
384,599 + 11496 mRNA_3128 0.30 1.6
384,619 + 11496 mRNA_3128 0.32 1.1
384,650 + 11496 mRNA_3128 0.36 0.8
384,741 + 11496 mRNA_3128 0.46 0.2
384,741 + 11496 mRNA_3128 0.46 -0.3
384,741 + 11496 mRNA_3128 0.46 2.7
384,741 + 11496 mRNA_3128 0.46 0.4
384,744 + 11496 mRNA_3128 0.47 0.9
384,922 - 11496 mRNA_3128 0.67 0.1
384,929 + 11496 mRNA_3128 0.68 -1.1
384,948 + 11496 mRNA_3128 0.70 -0.2
384,948 + 11496 mRNA_3128 0.70 0.8
385,095 + 11496 mRNA_3128 0.87 0.0
385,095 + 11496 mRNA_3128 0.87 -1.3
385,237 + -0.0
385,246 - 0.1
385,249 + 0.5
385,256 + -2.2
385,258 - -0.1
385,365 - 0.2
385,376 + -1.0
385,386 - 0.8
385,532 - 11497 mRNA_3129 0.11 -0.5
385,689 - 11497 mRNA_3129 0.28 0.2
385,696 - 11497 mRNA_3129 0.29 2.0
385,825 - 11497 mRNA_3129 0.43 0.1
385,838 + 11497 mRNA_3129 0.44 -0.3
385,958 + 11497 mRNA_3129 0.57 0.4
385,987 - 11497 mRNA_3129 0.60 -0.7
386,110 - 11497 mRNA_3129 0.74 0.8
386,116 - 11497 mRNA_3129 0.74 -0.2
386,127 - 11497 mRNA_3129 0.75 -2.2
386,136 - 11497 mRNA_3129 0.76 0.9
386,139 - 11497 mRNA_3129 0.77 -1.3