Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3127

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3126: 11494 - KOG0019 Molecular chaperone (HSP90 family), at 380662 to 381306 11494 mRNA_3127: 11495 - K11984 SART1, HAF, SNU66 U4/U6.U5 tri-snRNP-associated protein 1, at 381334 to 384253 11495 mRNA_3128: 11496 - BLAST protein transporter [Pseudozyma hubeiensis SY62], at 384343 to 385202 11496

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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380,571 + -1.2
380,603 + -1.0
380,720 - -0.5
380,740 + 11494 mRNA_3126 0.12 -0.3
380,851 - 11494 mRNA_3126 0.29 -0.1
380,854 - 11494 mRNA_3126 0.30 -1.4
380,854 + 11494 mRNA_3126 0.30 -0.3
380,868 + 11494 mRNA_3126 0.32 -0.9
380,875 + 11494 mRNA_3126 0.33 -1.5
380,877 + 11494 mRNA_3126 0.33 0.5
380,882 + 11494 mRNA_3126 0.34 1.6
380,888 + 11494 mRNA_3126 0.35 -0.4
380,888 + 11494 mRNA_3126 0.35 -0.2
380,935 - 11494 mRNA_3126 0.42 1.0
380,940 + 11494 mRNA_3126 0.43 -4.7
381,015 + 11494 mRNA_3126 0.55 1.7
381,024 - 11494 mRNA_3126 0.56 0.4
381,027 - 11494 mRNA_3126 0.57 1.2
381,161 - 11494 mRNA_3126 0.77 -0.9
381,171 - 11494 mRNA_3126 0.79 0.2
381,173 + 11494 mRNA_3126 0.79 -0.2
381,293 + -2.1
381,458 - 0.9
381,581 + 0.1
381,614 + -0.4
381,833 + 11495 mRNA_3127 0.17 0.0
381,886 + 11495 mRNA_3127 0.19 -0.1
381,995 + 11495 mRNA_3127 0.23 1.3
382,017 + 11495 mRNA_3127 0.23 -0.5
382,179 + 11495 mRNA_3127 0.29 -0.2
382,184 + 11495 mRNA_3127 0.29 -2.7
382,428 + 11495 mRNA_3127 0.37 -0.1
382,559 + 11495 mRNA_3127 0.42 0.7
382,588 + 11495 mRNA_3127 0.43 -0.1
382,600 + 11495 mRNA_3127 0.43 -2.2
382,710 - 11495 mRNA_3127 0.47 -0.8
382,852 - 11495 mRNA_3127 0.52 -0.3
383,243 - 11495 mRNA_3127 0.65 0.3
383,261 + 11495 mRNA_3127 0.66 0.3
383,315 - 11495 mRNA_3127 0.68 -0.0
383,323 + 11495 mRNA_3127 0.68 -0.8
383,425 + 11495 mRNA_3127 0.72 -0.8
383,455 + 11495 mRNA_3127 0.73 1.2
383,585 - 11495 mRNA_3127 0.77 -0.1
383,599 - 11495 mRNA_3127 0.78 0.7
383,613 + 11495 mRNA_3127 0.78 0.3
383,762 - 11495 mRNA_3127 0.83 -1.3
384,060 + -0.5
384,122 - -1.5
384,271 + -0.5
384,348 + -0.1
384,349 - 0.8
384,352 + 0.5
384,442 + 11496 mRNA_3128 0.12 -0.4
384,476 - 11496 mRNA_3128 0.15 -0.0
384,485 - 11496 mRNA_3128 0.17 -2.9
384,508 - 11496 mRNA_3128 0.19 0.9
384,531 + 11496 mRNA_3128 0.22 2.2
384,599 + 11496 mRNA_3128 0.30 1.6
384,619 + 11496 mRNA_3128 0.32 1.1
384,650 + 11496 mRNA_3128 0.36 0.8
384,741 + 11496 mRNA_3128 0.46 0.2
384,741 + 11496 mRNA_3128 0.46 -0.3
384,741 + 11496 mRNA_3128 0.46 2.7
384,741 + 11496 mRNA_3128 0.46 0.4
384,744 + 11496 mRNA_3128 0.47 0.9
384,922 - 11496 mRNA_3128 0.67 0.1
384,929 + 11496 mRNA_3128 0.68 -1.1
384,948 + 11496 mRNA_3128 0.70 -0.2
384,948 + 11496 mRNA_3128 0.70 0.8
385,095 + 11496 mRNA_3128 0.87 0.0
385,095 + 11496 mRNA_3128 0.87 -1.3
385,237 + -0.0
385,246 - 0.1
385,249 + 0.5