Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3125

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3124: 11492 - K04079 HSP90A, htpG molecular chaperone HtpG, at 373558 to 376751 11492 mRNA_3125: 11493 - K08145 SLC2A8, GLUT8 MFS transporter, SP family, solute carrier family 2 (facilitated glucose transporter), member 8, at 377288 to 379485 11493

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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376,294 + 11492 mRNA_3124 0.86 -0.7
376,446 - -1.1
376,492 - 0.7
376,597 + -0.3
376,703 + 0.3
376,715 - -1.5
376,737 + -0.2
376,748 + 0.3
376,871 - -0.5
376,878 - 0.5
376,916 - -0.9
376,917 + 0.8
376,922 + -0.3
376,989 - 0.9
377,034 - -0.2
377,035 + 0.3
377,046 - -1.3
377,048 + -0.2
377,181 - 1.2
377,182 - 1.3
377,188 + 3.1
377,810 + 11493 mRNA_3125 0.24 0.0
378,211 + 11493 mRNA_3125 0.42 0.8
378,431 + 11493 mRNA_3125 0.52 -0.7
378,876 + 11493 mRNA_3125 0.72 -0.5
378,915 - 11493 mRNA_3125 0.74 1.3
378,971 - 11493 mRNA_3125 0.77 -4.2
379,142 - 11493 mRNA_3125 0.84 0.6
379,146 + 11493 mRNA_3125 0.85 0.6
379,271 + -0.6
379,393 + 1.1
379,506 - 1.3
379,511 - -1.1
379,520 + -1.6
379,528 + -0.0
379,655 - 0.3
379,810 - 0.6
379,834 - 0.0
379,988 + -0.8
379,989 + 0.3
379,991 - 0.5
380,093 - 2.3
380,093 + 0.7
380,113 + -2.6
380,132 + -0.4
380,147 - -0.4
380,294 - -2.3