Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3120

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3119: 11487 - BLAST Spindle pole body protein pcp1 [Hypsizygus marmoreus], at 362785 to 367104 11487 mRNA_3120: 11488 - BLAST Protein cps3 [Rhizoctonia solani], at 367437 to 369368 11488 mRNA_3121: 11489 - KOG1039 Predicted E3 ubiquitin ligase, at 369378 to 369678 11489 mRNA_3122: 11490 - K05290 PIGK phosphatidylinositol glycan, class K, at 370199 to 371731 11490

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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366,560 + 11487 mRNA_3119 0.87 -0.8
366,566 + 11487 mRNA_3119 0.88 0.1
366,729 + -1.1
366,856 + -1.3
366,994 - 0.6
366,995 - 1.2
367,159 + 0.2
367,164 + -0.1
367,165 + 1.7
367,167 + 0.4
367,198 - 0.0
367,201 - 0.8
367,207 + 0.7
367,211 + 1.1
367,317 - -0.1
367,318 + 1.1
367,326 - -0.0
367,329 - -0.0
367,473 - 0.7
367,478 - 0.3
367,501 + -3.1
367,603 - 0.1
367,763 - 11488 mRNA_3120 0.17 0.1
367,924 - 11488 mRNA_3120 0.25 0.1
367,933 + 11488 mRNA_3120 0.26 -1.0
367,936 + 11488 mRNA_3120 0.26 0.7
367,990 - 11488 mRNA_3120 0.29 0.9
368,006 + 11488 mRNA_3120 0.29 -1.6
368,074 - 11488 mRNA_3120 0.33 -0.4
368,208 + 11488 mRNA_3120 0.40 -0.3
368,242 + 11488 mRNA_3120 0.42 -4.2
368,341 + 11488 mRNA_3120 0.47 0.0
368,502 + 11488 mRNA_3120 0.55 -0.1
368,540 + 11488 mRNA_3120 0.57 -0.0
368,552 + 11488 mRNA_3120 0.58 0.2
368,665 - 11488 mRNA_3120 0.64 -0.5
368,683 - 11488 mRNA_3120 0.64 0.3
368,698 + 11488 mRNA_3120 0.65 -1.8
368,809 - 11488 mRNA_3120 0.71 -0.1
368,918 + 11488 mRNA_3120 0.77 -0.3
368,966 + 11488 mRNA_3120 0.79 0.4
368,967 + 11488 mRNA_3120 0.79 0.2
368,975 + 11488 mRNA_3120 0.80 0.5
369,079 + 11488 mRNA_3120 0.85 1.9
369,090 + 11488 mRNA_3120 0.86 1.4
369,227 - 0.5
369,231 - 2.3
369,236 - -0.4
369,237 - -0.2
369,239 + 0.1
369,268 - -1.7
369,302 + -0.1
369,370 - -0.3
369,372 - -0.4
369,394 + -0.5
369,402 - -0.7
369,521 - 11489 mRNA_3121 0.48 -1.8
369,635 + 11489 mRNA_3121 0.85 -0.5
369,665 - 0.5
369,705 + 0.1
369,706 - 0.4
369,710 + 0.3
369,828 - -0.6
369,834 - -2.2
369,968 - 0.5
369,972 - -0.4
369,980 + -1.1
369,994 - 1.5
370,120 - 0.5
370,127 + -0.7
370,128 - -1.3
370,140 - -0.7
370,144 - 0.0
370,145 + -3.2
370,145 + -0.6
370,156 - -0.2
370,159 + -1.1
370,281 - 0.4
370,287 - -0.5
370,336 + 3.0