Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3118

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3117: 11485 - KOG1110 Putative steroid membrane receptor Hpr6.6/25-Dx, at 357751 to 358834 11485 mRNA_3118: 11486 - K01881 PARS, proS prolyl-tRNA synthetase, at 359416 to 362125 11486 mRNA_3119: 11487 - BLAST Spindle pole body protein pcp1 [Hypsizygus marmoreus], at 362785 to 367104 11487

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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358,471 - 11485 mRNA_3117 0.66 0.7
358,472 + 11485 mRNA_3117 0.67 -0.2
358,614 + 11485 mRNA_3117 0.80 -0.3
358,627 - 11485 mRNA_3117 0.81 -1.3
358,627 + 11485 mRNA_3117 0.81 0.6
358,638 - 11485 mRNA_3117 0.82 0.2
358,734 + 0.8
358,761 - -3.4
358,782 + 0.1
358,892 + -0.1
358,905 + -0.1
358,905 - 0.2
358,907 - -1.2
358,912 + -1.0
358,916 - -0.4
358,927 + 1.0
358,930 + 0.4
358,934 + 0.6
359,049 - -1.9
359,052 - 0.4
359,058 - 0.4
359,059 + -0.7
359,064 - 0.8
359,070 + 1.3
359,084 + 0.6
359,086 + -0.2
359,195 - 0.1
359,231 - 0.6
359,231 - 0.6
359,269 + 0.0
359,303 - -1.2
359,346 - -0.7
359,369 + -1.2
359,492 - 2.0
359,497 + -0.0
359,528 - 1.0
359,549 - -0.3
359,553 + 1.1
359,618 - 1.1
359,644 - 1.2
359,659 + 0.9
359,668 + 0.2
359,668 + 1.6
359,801 - 11486 mRNA_3118 0.14 -2.0
359,804 + 11486 mRNA_3118 0.14 -0.8
359,947 - 11486 mRNA_3118 0.20 -0.3
359,961 - 11486 mRNA_3118 0.20 -0.2
360,161 + 11486 mRNA_3118 0.27 0.3
360,197 - 11486 mRNA_3118 0.29 -1.7
360,365 - 11486 mRNA_3118 0.35 0.2
360,377 - 11486 mRNA_3118 0.35 0.5
360,482 + 11486 mRNA_3118 0.39 0.2
360,832 + 11486 mRNA_3118 0.52 0.1
360,930 + 11486 mRNA_3118 0.56 0.1
360,956 - 11486 mRNA_3118 0.57 -2.3
361,004 + 11486 mRNA_3118 0.59 -0.3
361,107 - 11486 mRNA_3118 0.62 1.9
361,162 + 11486 mRNA_3118 0.64 0.2
361,436 - 11486 mRNA_3118 0.75 1.4
361,446 - 11486 mRNA_3118 0.75 -1.8
361,565 + 11486 mRNA_3118 0.79 -0.4
361,692 - 11486 mRNA_3118 0.84 0.2
361,701 - 11486 mRNA_3118 0.84 1.5
361,716 - 11486 mRNA_3118 0.85 -0.6
361,744 + 11486 mRNA_3118 0.86 1.6
362,107 - -0.4
362,201 - 1.0
362,417 - 0.7
362,461 + -1.6
362,669 - 0.7
362,684 + 0.7
362,753 + -1.0
362,863 + -1.2
362,910 + -0.4
362,970 + 1.1
363,030 + 2.0