Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3112

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3111: 11479 - K09788 prpF 2-methylaconitate isomerase, at 349482 to 350899 11479 mRNA_3112: 11480 - Hypothetical Protein, at 351079 to 352331 11480 mRNA_3113: 11481 - K11361 SPT20, ADA5 transcription factor SPT20, at 352715 to 353874 11481

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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350,158 - 11479 mRNA_3111 0.48 -0.2
350,309 + 11479 mRNA_3111 0.58 -0.4
350,440 - 11479 mRNA_3111 0.68 -0.1
350,449 + 11479 mRNA_3111 0.68 -0.7
350,466 - 11479 mRNA_3111 0.69 -1.3
350,559 - 11479 mRNA_3111 0.76 0.9
350,842 - 1.3
350,889 + 1.7
350,906 + 0.3
350,939 + -2.1
351,019 - -0.8
351,021 + 2.0
351,029 - -1.2
351,033 - 2.1
351,066 - -0.5
351,228 + 11480 mRNA_3112 0.12 0.3
351,634 - 11480 mRNA_3112 0.44 -0.0
351,634 - 11480 mRNA_3112 0.44 0.5
351,634 - 11480 mRNA_3112 0.44 1.0
351,638 + 11480 mRNA_3112 0.45 0.6
351,716 + 11480 mRNA_3112 0.51 -1.5
351,725 - 11480 mRNA_3112 0.52 -0.7
351,753 - 11480 mRNA_3112 0.54 -1.8
351,772 - 11480 mRNA_3112 0.55 -0.1
351,775 - 11480 mRNA_3112 0.56 1.9
351,923 + 11480 mRNA_3112 0.67 -0.5
352,060 - 11480 mRNA_3112 0.78 -0.9
352,062 - 11480 mRNA_3112 0.78 0.3
352,175 + 11480 mRNA_3112 0.87 -0.1
352,240 - -1.0
352,271 + 3.3
352,355 + -2.2
352,469 - 1.4
352,487 + 0.8
352,652 + 0.8
352,663 - 0.2
352,670 + 0.8
352,670 + 0.4
352,689 + -1.0
352,791 - 1.3
352,922 - 11481 mRNA_3113 0.18 -0.3
352,971 - 11481 mRNA_3113 0.22 -1.5
353,052 - 11481 mRNA_3113 0.29 1.0
353,069 - 11481 mRNA_3113 0.31 -0.4
353,200 + 11481 mRNA_3113 0.42 0.3