Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3109

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3108: 11476 - KOG2203 GTP-binding protein, at 340842 to 344399 11476 mRNA_3109: 11477 - K13172 SRRM2, SRM300 serine/arginine repetitive matrix protein 2, at 344614 to 345945 11477 mRNA_3110: 11478 - K14558 PWP2, UTP1 periodic tryptophan protein 2, at 346099 to 349205 11478

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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343,695 + 11476 mRNA_3108 0.80 -0.1
343,859 - 11476 mRNA_3108 0.85 0.9
344,002 - 11476 mRNA_3108 0.89 -0.3
344,131 - 0.4
344,132 + 0.8
344,134 + -1.4
344,135 - -0.3
344,142 - 0.9
344,155 - -0.8
344,269 + -0.6
344,277 - 0.3
344,283 + -2.5
344,292 - -1.0
344,292 - -0.6
344,298 - 1.9
344,299 + 1.0
344,302 + -0.2
344,306 + 1.4
344,437 - 0.0
344,438 - -0.3
344,439 - 0.3
344,451 - 0.6
344,451 + -0.6
344,457 + 0.6
344,457 - 1.0
344,458 + 0.1
344,549 - 0.6
344,575 - 0.1
344,575 + 0.1
344,582 - -2.0
344,584 - -0.6
344,586 - 0.5
344,588 - 0.8
344,589 + -0.9
344,595 - -1.1
344,596 + -0.1
344,603 + 0.0
344,614 + -1.3
344,733 - 0.5
344,741 + 0.3
344,746 - 2.1
344,749 + 11477 mRNA_3109 0.10 -0.3
344,864 - 11477 mRNA_3109 0.19 0.3
344,872 - 11477 mRNA_3109 0.19 3.5
344,875 + 11477 mRNA_3109 0.20 -0.7
344,901 + 11477 mRNA_3109 0.22 2.5
345,007 - 11477 mRNA_3109 0.30 -1.4
345,018 + 11477 mRNA_3109 0.30 1.5
345,042 + 11477 mRNA_3109 0.32 1.0
345,060 - 11477 mRNA_3109 0.33 -1.3
345,141 - 11477 mRNA_3109 0.40 -1.1
345,142 + 11477 mRNA_3109 0.40 1.9
345,165 + 11477 mRNA_3109 0.41 0.3
345,306 - 11477 mRNA_3109 0.52 1.1
345,430 - 11477 mRNA_3109 0.61 4.0
345,438 + 11477 mRNA_3109 0.62 2.6
345,473 - 11477 mRNA_3109 0.64 -0.1
345,581 + 11477 mRNA_3109 0.73 1.8
345,621 + 11477 mRNA_3109 0.76 0.9
345,914 - 1.6
346,065 + 1.3
346,186 + 0.5
346,189 - -2.3
346,432 + 11478 mRNA_3110 0.11 0.5
346,452 - 11478 mRNA_3110 0.11 -0.9
346,597 + 11478 mRNA_3110 0.16 1.6
346,618 - 11478 mRNA_3110 0.17 -0.2
346,666 - 11478 mRNA_3110 0.18 -2.2
346,700 - 11478 mRNA_3110 0.19 0.6
346,757 + 11478 mRNA_3110 0.21 0.5
346,772 + 11478 mRNA_3110 0.22 -1.3
346,798 - 11478 mRNA_3110 0.22 0.5