Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3104

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3103: 11471 - ProSiteProfiles-F-box domain profile.-PS50181,SUPERFAMILY--SSF81383, at 328830 to 331254 11471 mRNA_3104: 11472 - HMMPfam-Uncharacterized conserved protein (DUF2156)-PF09924, at 331820 to 333279 11472

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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330,999 + 11471 mRNA_3103 0.89 0.9
331,303 - -0.1
331,419 + 2.4
331,430 + 1.2
331,584 - 2.7
331,593 + 2.7
331,859 + -1.1
331,864 + -1.9
331,875 - 1.6
331,877 + 0.1
332,159 - 11472 mRNA_3104 0.23 0.9
332,167 + 11472 mRNA_3104 0.24 0.2
332,298 + 11472 mRNA_3104 0.33 -0.4
332,611 + 11472 mRNA_3104 0.54 -0.2
332,657 - 11472 mRNA_3104 0.57 0.3
332,721 - 11472 mRNA_3104 0.62 0.9
332,721 + 11472 mRNA_3104 0.62 -0.0
332,842 + 11472 mRNA_3104 0.70 1.4
332,857 - 11472 mRNA_3104 0.71 1.3
332,864 + 11472 mRNA_3104 0.72 -0.3
333,022 + 11472 mRNA_3104 0.82 0.6
333,029 - 11472 mRNA_3104 0.83 0.1
333,033 - 11472 mRNA_3104 0.83 -2.8
333,035 + 11472 mRNA_3104 0.83 0.4
333,148 - -0.4
333,182 + 0.4
333,284 - -0.5
333,289 + -1.7
333,315 + 0.4
333,315 - -0.4
333,322 - -2.9
333,324 + -0.0
333,342 - -0.4
333,364 + -0.8
333,366 + -3.1
333,470 + -0.6
333,471 + 2.0
333,472 - -0.3
333,472 + 1.5
333,475 - -0.3
333,480 - 0.4
333,481 + -0.6
333,482 - 1.3
333,484 - -0.5
333,485 - 0.4
333,485 + 0.9
333,486 - -0.2
333,487 - -1.3
333,489 + 0.5
333,489 - -0.1
333,489 + -1.2
333,489 + 0.4
333,493 + 0.2
333,499 - -0.6
333,500 + -3.2
333,501 + 0.7
333,501 + 0.1
333,502 + 0.4
333,514 + 1.6
333,516 - -1.2
333,518 - -0.8
333,519 + -1.4
333,520 + 0.4
333,523 - 1.7
333,523 + 1.0
333,532 - 2.0
333,537 + -0.8
333,554 - 0.9
333,582 + 0.4
333,646 - -0.6
333,648 - -0.4
333,653 + 0.6
333,657 + 0.3
333,657 + -2.6
333,662 + -0.7
333,663 - 1.3
333,663 - 2.2
333,664 - -0.0
333,664 + -1.8
333,665 + -2.2
333,666 - -0.1
333,667 - -1.1
333,674 - -1.0
333,675 - -1.0
333,676 - 0.3
333,676 + 0.1
333,676 + -3.4
333,681 - 0.0
333,705 + 2.3
333,706 - -0.1
333,706 - 2.2
333,706 - 0.7
333,706 - 0.5
333,707 - -1.5
333,708 - -0.6
333,708 - 0.6
333,708 - 0.8
333,718 + 1.6
333,718 - -0.2
333,720 - -0.6
333,729 - -0.6
333,730 - -0.2
333,733 - 1.0
333,735 + 1.1
333,749 + -1.2
333,754 - -1.4
333,767 - -0.6
333,768 + -1.2
333,783 + -0.3
333,788 + -1.7
333,798 + 0.7
333,843 + 0.7
333,889 - 1.6
333,889 - -0.1
333,905 - 1.7
333,905 - -0.6
333,906 + -2.5
333,910 - -2.1
333,914 - -1.9
333,915 + -0.1
333,920 + -0.4
333,923 + -1.9
333,925 - 0.4
333,929 + -0.6
333,968 + 0.1
334,021 + 0.6
334,045 - -0.0
334,073 + -0.6
334,086 - 1.8
334,088 + -1.9
334,089 + 0.7
334,107 + 0.1
334,117 + -1.1
334,195 - 0.6
334,207 - -0.1
334,214 - -0.1
334,214 - -0.3
334,217 - -0.0
334,225 + 0.2
334,227 + -2.5
334,228 + -0.5
334,234 - 1.3
334,246 - 0.9
334,248 - -0.5
334,249 + 0.9
334,253 - 0.1
334,259 + -0.5