Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3093

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3092: 11460 - KOG4784 Uncharacterized conserved protein, at 300048 to 303992 11460 mRNA_3093: 11461 - Hypothetical Protein, at 304363 to 305282 11461 mRNA_3094: 11462 - HMMPfam-Bestrophin, RFP-TM, chloride channel-PF01062, at 305611 to 307227 11462

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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303,449 - 11460 mRNA_3092 0.86 -1.2
303,458 + 11460 mRNA_3092 0.86 0.5
303,460 + 11460 mRNA_3092 0.86 -0.6
303,477 + 11460 mRNA_3092 0.87 -0.2
303,576 + 11460 mRNA_3092 0.89 -1.2
303,606 - 0.2
303,607 + -0.3
303,610 - -1.9
303,614 - 1.1
303,643 + -1.8
303,744 - 0.1
303,748 - 0.3
303,749 + -2.6
303,760 - 0.7
303,760 + 0.7
303,766 + 0.2
303,891 - 0.2
303,898 - -0.5
304,033 + 0.2
304,038 - -0.2
304,038 + -0.3
304,041 - 0.5
304,045 - -0.3
304,046 + 2.0
304,052 + -0.1
304,054 - -0.3
304,166 - 2.5
304,222 + 0.1
304,371 + 1.1
304,445 + 1.2
304,482 + 11461 mRNA_3093 0.13 0.7
304,494 + 11461 mRNA_3093 0.14 0.6
304,599 + 11461 mRNA_3093 0.26 -0.0
304,609 - 11461 mRNA_3093 0.27 -0.3
304,687 - 11461 mRNA_3093 0.35 0.0
304,695 + 11461 mRNA_3093 0.36 0.5
304,753 + 11461 mRNA_3093 0.42 1.1
304,926 - 11461 mRNA_3093 0.61 1.2
304,959 + 11461 mRNA_3093 0.65 -1.1
304,999 + 11461 mRNA_3093 0.69 -2.6
305,056 - 11461 mRNA_3093 0.75 -0.0
305,060 - 11461 mRNA_3093 0.76 2.5
305,077 - 11461 mRNA_3093 0.78 -0.1
305,208 + 1.7
305,211 - 0.0
305,219 + 0.9
305,223 + 1.1
305,339 - -0.8
305,364 + -0.2
305,365 + -1.5
305,367 + -1.1
305,369 + 0.5
305,376 - -1.8
305,377 + 0.1
305,378 - 0.2
305,381 - 0.5
305,381 - 0.7
305,470 + -0.6
305,481 - -0.5
305,483 + 1.9
305,492 + 0.7
305,492 + -0.4
305,508 + 0.5
305,508 - 1.8
305,512 - -0.2
305,513 - 0.1
305,516 - 0.3
305,516 + 0.8
305,520 - 0.4
305,522 + -1.1
305,524 - -0.7
305,535 - -0.5
305,542 + -0.5
305,562 - -0.1
305,628 + 0.2
305,636 - -2.6
305,660 - -1.6
305,664 - 1.2
305,680 + 0.3
305,683 - 0.6
305,687 + -1.3
305,694 - 0.9
305,725 - -2.4
305,797 - 11462 mRNA_3094 0.12 1.2
305,803 - 11462 mRNA_3094 0.12 -0.9
305,816 + 11462 mRNA_3094 0.13 -1.2
305,834 - 11462 mRNA_3094 0.14 0.5
305,847 + 11462 mRNA_3094 0.15 -0.5
305,848 + 11462 mRNA_3094 0.15 3.2
305,876 - 11462 mRNA_3094 0.16 -0.2
305,931 - 11462 mRNA_3094 0.20 -0.3
305,979 + 11462 mRNA_3094 0.23 -0.4
305,989 + 11462 mRNA_3094 0.23 1.3
306,002 - 11462 mRNA_3094 0.24 -0.4
306,112 + 11462 mRNA_3094 0.31 0.1
306,128 + 11462 mRNA_3094 0.32 0.3
306,252 - 11462 mRNA_3094 0.40 -0.9