Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3078

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3077: 11445 - K07542 PIGV phosphatidylinositol glycan, class V, at 264209 to 265729 11445 mRNA_3078: 11446 - K01613 psd, PISD phosphatidylserine decarboxylase, at 265905 to 270528 11446 mRNA_3079: 11447 - HMMPfam-DNA polymerase Ligase (LigD)-PF13298, at 270913 to 272289 11447

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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264,914 - 11445 mRNA_3077 0.46 -0.0
265,060 - 11445 mRNA_3077 0.56 2.2
265,094 + 11445 mRNA_3077 0.58 -0.1
265,114 + 11445 mRNA_3077 0.60 -0.6
265,122 + 11445 mRNA_3077 0.60 -2.4
265,137 - 11445 mRNA_3077 0.61 -0.9
265,148 - 11445 mRNA_3077 0.62 -0.6
265,153 + 11445 mRNA_3077 0.62 0.0
265,160 - 11445 mRNA_3077 0.63 -0.8
265,180 - 11445 mRNA_3077 0.64 2.4
265,258 + 11445 mRNA_3077 0.69 0.4
265,296 + 11445 mRNA_3077 0.71 -0.0
265,340 - 11445 mRNA_3077 0.74 -0.3
265,415 - 11445 mRNA_3077 0.79 0.6
265,426 - 11445 mRNA_3077 0.80 0.8
265,433 - 11445 mRNA_3077 0.80 0.3
265,437 - 11445 mRNA_3077 0.81 -0.6
265,437 - 11445 mRNA_3077 0.81 -0.1
265,447 + 11445 mRNA_3077 0.81 0.3
265,545 - 11445 mRNA_3077 0.88 1.4
265,602 + -0.6
265,605 + -2.5
265,611 + -0.3
265,625 - -0.8
265,724 + -2.7
265,731 - 0.4
265,738 - -0.4
265,740 - -0.1
265,748 - -1.9
265,758 - 0.3
265,890 - 1.7
265,905 + -1.6
265,915 - 0.2
266,184 + 0.3
266,494 - 11446 mRNA_3078 0.13 1.9
266,538 + 11446 mRNA_3078 0.14 -1.9
266,610 + 11446 mRNA_3078 0.15 0.8
266,642 - 11446 mRNA_3078 0.16 0.4
266,739 - 11446 mRNA_3078 0.18 0.6
266,769 - 11446 mRNA_3078 0.19 0.8
266,800 + 11446 mRNA_3078 0.19 1.7
266,847 + 11446 mRNA_3078 0.20 0.5
266,872 - 11446 mRNA_3078 0.21 -0.1
267,083 + 11446 mRNA_3078 0.25 1.0
267,086 - 11446 mRNA_3078 0.26 -0.3
267,089 + 11446 mRNA_3078 0.26 -0.0
267,090 + 11446 mRNA_3078 0.26 0.8
267,114 + 11446 mRNA_3078 0.26 0.1
267,138 + 11446 mRNA_3078 0.27 -1.4
267,145 - 11446 mRNA_3078 0.27 0.7
267,351 - 11446 mRNA_3078 0.31 -0.9
267,366 + 11446 mRNA_3078 0.32 -0.3
267,400 - 11446 mRNA_3078 0.32 -2.3
267,498 - 11446 mRNA_3078 0.34 1.1
267,507 + 11446 mRNA_3078 0.35 0.3
267,508 + 11446 mRNA_3078 0.35 -0.8
267,663 - 11446 mRNA_3078 0.38 -0.1
267,750 + 11446 mRNA_3078 0.40 0.9
267,784 - 11446 mRNA_3078 0.41 1.0
267,965 + 11446 mRNA_3078 0.45 0.2
267,998 + 11446 mRNA_3078 0.45 1.7
268,003 + 11446 mRNA_3078 0.45 -0.3
268,019 + 11446 mRNA_3078 0.46 0.1
268,037 - 11446 mRNA_3078 0.46 -1.8
268,077 + 11446 mRNA_3078 0.47 1.7
268,245 + 11446 mRNA_3078 0.51 -1.3
268,403 - 11446 mRNA_3078 0.54 -0.6
268,403 - 11446 mRNA_3078 0.54 0.9
268,452 + 11446 mRNA_3078 0.55 0.5
268,535 - 11446 mRNA_3078 0.57 -0.1
268,653 - 11446 mRNA_3078 0.59 -0.9
268,825 + 11446 mRNA_3078 0.63 0.3
269,043 - 11446 mRNA_3078 0.68 2.8
269,138 - 11446 mRNA_3078 0.70 0.3
269,246 - 11446 mRNA_3078 0.72 1.9
269,255 - 11446 mRNA_3078 0.72 1.8
269,338 + 11446 mRNA_3078 0.74 0.2
269,523 - 11446 mRNA_3078 0.78 -0.2
269,652 + 11446 mRNA_3078 0.81 1.7
269,684 - 11446 mRNA_3078 0.82 0.6
269,826 + 11446 mRNA_3078 0.85 -0.4
269,922 - 11446 mRNA_3078 0.87 0.8
269,924 - 11446 mRNA_3078 0.87 0.3
269,982 + 11446 mRNA_3078 0.88 -0.3
270,119 + 2.3
270,132 - -0.6
270,172 - -0.2
270,278 + 1.3
270,280 + -0.9
270,282 - -0.1
270,407 - -1.2
270,407 - -1.1
270,407 - -0.6
270,415 - -0.3
270,538 + 0.8
270,558 + -0.9
270,569 - -0.3
270,578 + -0.5
270,579 + -1.4
270,700 - -0.9
270,701 - 0.2
270,701 - -0.4
270,711 + -0.4
270,717 + -1.5
270,721 - -1.7
270,728 - 0.5
270,732 + 0.0
270,857 - 0.7
270,859 - -1.8
270,890 + -2.1
271,039 - 0.3
271,163 - 11447 mRNA_3079 0.18 0.5
271,182 - 11447 mRNA_3079 0.20 0.9
271,327 + 11447 mRNA_3079 0.30 0.9
271,423 - 11447 mRNA_3079 0.37 -0.9
271,488 + 11447 mRNA_3079 0.42 -0.0