Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3075

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3074: 11442 - KOG4650 Predicted steroid reductase, at 250206 to 251968 11442 mRNA_3075: 11443 - K07652 vicK two-component system, OmpR family, sensor histidine kinase VicK, at 252187 to 260484 11443

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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251,443 - 11442 mRNA_3074 0.70 3.4
251,570 - 11442 mRNA_3074 0.77 0.4
251,577 + 11442 mRNA_3074 0.78 -2.6
251,720 + 11442 mRNA_3074 0.86 -0.6
251,734 - 11442 mRNA_3074 0.87 -3.2
251,738 + 11442 mRNA_3074 0.87 3.0
251,739 + 11442 mRNA_3074 0.87 -0.0
251,739 - 11442 mRNA_3074 0.87 -1.3
251,761 + 11442 mRNA_3074 0.88 1.6
251,833 + 0.6
251,853 - -0.2
251,854 + -0.3
251,867 + -1.7
251,869 + 0.3
251,879 + -0.2
251,891 + -0.2
251,896 - -1.1
251,980 - -0.4
251,981 + -1.5
251,988 - -0.3
252,011 + 0.1
252,031 - -1.6
252,043 + 0.8
252,043 + 0.1
252,051 - -0.1
252,054 + -0.6
252,054 + 0.1
252,057 - -0.3
252,073 - -0.2
252,176 - -0.4
252,176 - -0.2
252,205 - -0.5
252,342 + -0.4
252,437 + -1.2
252,453 + 0.3
252,501 + 0.5
252,541 + 0.0
252,647 - -0.5
252,653 + 0.2
252,777 + 3.0
252,914 + -1.8
252,917 + 0.9
253,133 + 11443 mRNA_3075 0.11 0.3
253,366 - 11443 mRNA_3075 0.14 -1.6
253,450 - 11443 mRNA_3075 0.15 -2.5
253,463 - 11443 mRNA_3075 0.15 -0.2
253,511 - 11443 mRNA_3075 0.16 0.8
253,525 + 11443 mRNA_3075 0.16 1.3
253,538 + 11443 mRNA_3075 0.16 -1.6
253,540 - 11443 mRNA_3075 0.16 -0.8
253,559 - 11443 mRNA_3075 0.17 1.1
253,605 + 11443 mRNA_3075 0.17 0.9
253,617 + 11443 mRNA_3075 0.17 -1.1
253,624 + 11443 mRNA_3075 0.17 -1.4
253,636 - 11443 mRNA_3075 0.17 0.0
253,648 - 11443 mRNA_3075 0.18 0.6
253,660 - 11443 mRNA_3075 0.18 -2.9
253,709 - 11443 mRNA_3075 0.18 0.5
253,803 - 11443 mRNA_3075 0.19 0.4
253,906 + 11443 mRNA_3075 0.21 1.0
253,915 + 11443 mRNA_3075 0.21 -2.4
253,963 + 11443 mRNA_3075 0.21 1.6
253,971 - 11443 mRNA_3075 0.21 -2.6
254,081 - 11443 mRNA_3075 0.23 0.7
254,085 + 11443 mRNA_3075 0.23 2.1
254,207 + 11443 mRNA_3075 0.24 -0.2
254,263 - 11443 mRNA_3075 0.25 -1.8
254,269 + 11443 mRNA_3075 0.25 0.9
254,338 - 11443 mRNA_3075 0.26 -0.3
254,372 - 11443 mRNA_3075 0.26 0.8
254,418 - 11443 mRNA_3075 0.27 0.5
254,539 - 11443 mRNA_3075 0.28 0.6
254,585 + 11443 mRNA_3075 0.29 0.1
254,706 + 11443 mRNA_3075 0.30 -0.2
254,710 - 11443 mRNA_3075 0.30 0.1
254,712 + 11443 mRNA_3075 0.30 -0.4
254,797 - 11443 mRNA_3075 0.31 -1.3
254,868 + 11443 mRNA_3075 0.32 0.6
254,972 + 11443 mRNA_3075 0.34 0.1
255,080 + 11443 mRNA_3075 0.35 -1.5
255,136 - 11443 mRNA_3075 0.36 -1.3
255,157 + 11443 mRNA_3075 0.36 0.0
255,295 - 11443 mRNA_3075 0.37 1.4
255,303 + 11443 mRNA_3075 0.38 -0.7
255,544 + 11443 mRNA_3075 0.40 1.8
255,585 + 11443 mRNA_3075 0.41 0.1
255,609 - 11443 mRNA_3075 0.41 0.9
255,644 - 11443 mRNA_3075 0.42 0.3
255,685 - 11443 mRNA_3075 0.42 -1.9
255,734 - 11443 mRNA_3075 0.43 0.5
255,768 + 11443 mRNA_3075 0.43 -0.6
255,834 + 11443 mRNA_3075 0.44 0.3
255,834 + 11443 mRNA_3075 0.44 0.4
255,920 + 11443 mRNA_3075 0.45 -0.5
255,921 - 11443 mRNA_3075 0.45 0.6
255,938 - 11443 mRNA_3075 0.45 -0.2
256,163 + 11443 mRNA_3075 0.48 0.6
256,179 - 11443 mRNA_3075 0.48 -1.0
256,216 - 11443 mRNA_3075 0.49 0.6
256,241 - 11443 mRNA_3075 0.49 2.4
256,280 - 11443 mRNA_3075 0.49 1.0
256,353 - 11443 mRNA_3075 0.50 -1.3
256,358 - 11443 mRNA_3075 0.50 -0.5
256,369 - 11443 mRNA_3075 0.50 -0.7
256,517 + 11443 mRNA_3075 0.52 -0.2
256,587 - 11443 mRNA_3075 0.53 0.5
256,692 - 11443 mRNA_3075 0.54 -1.4
256,892 - 11443 mRNA_3075 0.57 -0.2
256,940 + 11443 mRNA_3075 0.57 0.0
257,031 - 11443 mRNA_3075 0.58 0.2
257,050 - 11443 mRNA_3075 0.59 -0.1
257,105 - 11443 mRNA_3075 0.59 0.8
257,195 - 11443 mRNA_3075 0.60 -1.3
257,227 + 11443 mRNA_3075 0.61 -1.1
257,346 + 11443 mRNA_3075 0.62 -1.1
257,355 + 11443 mRNA_3075 0.62 -0.3
257,484 - 11443 mRNA_3075 0.64 0.6
257,536 + 11443 mRNA_3075 0.64 0.1
257,588 + 11443 mRNA_3075 0.65 0.3
257,620 - 11443 mRNA_3075 0.65 0.6
257,638 - 11443 mRNA_3075 0.66 0.3
257,901 + 11443 mRNA_3075 0.69 -0.8
258,000 + 11443 mRNA_3075 0.70 0.3
258,221 - 11443 mRNA_3075 0.73 2.0
258,430 - 11443 mRNA_3075 0.75 -2.3
258,434 - 11443 mRNA_3075 0.75 -1.4
258,726 + 11443 mRNA_3075 0.79 1.5
258,750 - 11443 mRNA_3075 0.79 -1.9
258,759 - 11443 mRNA_3075 0.79 -0.0
258,764 + 11443 mRNA_3075 0.79 -1.1
258,900 - 11443 mRNA_3075 0.81 0.4
258,942 + 11443 mRNA_3075 0.81 -0.5
258,989 + 11443 mRNA_3075 0.82 0.2
259,069 + 11443 mRNA_3075 0.83 -2.8
259,138 + 11443 mRNA_3075 0.84 -0.2
259,160 - 11443 mRNA_3075 0.84 -0.5
259,193 + 11443 mRNA_3075 0.84 -0.1
259,471 - 11443 mRNA_3075 0.88 0.6
259,474 - 11443 mRNA_3075 0.88 0.4
259,481 + 11443 mRNA_3075 0.88 1.0
259,482 + 11443 mRNA_3075 0.88 0.6
259,497 - 11443 mRNA_3075 0.88 -2.2
259,543 + 11443 mRNA_3075 0.89 0.4
259,565 - 11443 mRNA_3075 0.89 0.9
259,568 + 11443 mRNA_3075 0.89 -0.7
259,671 + -1.8
259,937 - -0.4
259,953 + 0.6
259,964 - -0.4
260,105 - 0.1
260,221 + 0.2
260,273 + -4.7
260,633 - 1.0
260,657 - 0.6
260,796 - 0.2
260,815 + -0.3
260,966 + -2.0
261,095 - 0.3
261,242 - -1.0
261,260 + -1.0
261,261 - 0.3
261,265 + 0.2
261,269 - -0.2
261,390 - 1.1
261,391 + 1.3
261,396 - -0.3
261,400 - -1.6
261,400 - -1.0
261,401 + 1.5
261,412 - -0.1
261,415 + -1.7
261,419 + 0.8
261,420 + 1.8
261,420 - -0.6
261,427 - -0.4
261,427 + -0.7
261,428 - 0.1
261,429 + 1.2
261,432 - -0.1
261,438 - -0.8
261,440 - 0.7
261,440 - 1.3
261,442 - -0.5
261,442 - -1.0
261,443 - 0.3
261,443 - -2.3
261,445 - -0.2
261,449 + -1.4
261,449 + 0.7
261,451 - -0.9
261,454 - -1.1
261,456 - 0.8
261,459 + -1.0
261,478 + -0.8