Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3047

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3046: 11414 - Hypothetical Protein, at 184191 to 185834 11414 mRNA_3047: 11415 - K03514 PAPD5_7, TRF4 non-canonical poly(A) RNA polymerase PAPD5/7, at 186454 to 188264 11415 mRNA_3048: 11416 - K03514 PAPD5_7, TRF4 non-canonical poly(A) RNA polymerase PAPD5/7, at 188658 to 190471 11416

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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185,515 + 11414 mRNA_3046 0.81 -1.4
185,618 - 11414 mRNA_3046 0.87 -1.5
185,786 + 1.6
185,917 - -0.8
185,976 + 0.6
186,020 - -0.1
186,051 - -0.7
186,187 - 0.9
186,212 - -0.6
186,212 - 1.1
186,226 - 0.0
186,229 + 0.7
186,345 - -0.5
186,359 - -1.1
186,397 + 0.3
186,502 - -0.0
186,503 - -0.1
186,506 + 0.5
186,510 - -1.0
186,526 + -1.1
186,560 + 0.5
186,702 + 11415 mRNA_3047 0.14 1.5
186,975 - 11415 mRNA_3047 0.29 -0.1
186,981 + 11415 mRNA_3047 0.29 -2.0
186,981 + 11415 mRNA_3047 0.29 -0.1
187,085 - 11415 mRNA_3047 0.35 -2.1
187,115 - 11415 mRNA_3047 0.36 0.9
187,136 + 11415 mRNA_3047 0.38 -1.7
187,272 + 11415 mRNA_3047 0.45 -0.2
187,297 + 11415 mRNA_3047 0.47 0.5
187,393 + 11415 mRNA_3047 0.52 1.1
187,393 - 11415 mRNA_3047 0.52 0.8
187,395 - 11415 mRNA_3047 0.52 -0.3
187,558 - 11415 mRNA_3047 0.61 1.1
188,007 + 11415 mRNA_3047 0.86 -0.2
188,028 + 11415 mRNA_3047 0.87 -3.6
188,031 - 11415 mRNA_3047 0.87 -0.6
188,130 - 1.1
188,134 - -3.1
188,239 + -0.5
188,275 + 2.0
188,310 + 0.4
188,315 + 1.7
188,424 + 0.9
188,445 + -0.5
188,553 + 0.6
188,555 - 0.2
188,556 - 0.2
188,564 + -1.2
188,571 - 1.2
188,572 + 0.4
188,576 + -0.8
188,583 - -3.0
188,584 + 2.0
188,598 + -2.3
188,615 + 0.1
188,917 + 11416 mRNA_3048 0.14 -1.9
189,041 + 11416 mRNA_3048 0.21 0.9
189,058 - 11416 mRNA_3048 0.22 -0.0
189,073 - 11416 mRNA_3048 0.23 0.3
189,075 + 11416 mRNA_3048 0.23 -1.0
189,109 + 11416 mRNA_3048 0.25 0.5
189,111 - 11416 mRNA_3048 0.25 -0.0
189,122 + 11416 mRNA_3048 0.26 0.2
189,125 + 11416 mRNA_3048 0.26 -0.0
189,127 - 11416 mRNA_3048 0.26 0.3
189,130 - 11416 mRNA_3048 0.26 1.4
189,139 - 11416 mRNA_3048 0.27 -0.2
189,145 - 11416 mRNA_3048 0.27 3.0
189,151 - 11416 mRNA_3048 0.27 0.3
189,153 - 11416 mRNA_3048 0.27 1.5
189,156 - 11416 mRNA_3048 0.27 -1.2
189,157 + 11416 mRNA_3048 0.28 -1.0
189,157 + 11416 mRNA_3048 0.28 -0.4
189,158 - 11416 mRNA_3048 0.28 0.9
189,165 + 11416 mRNA_3048 0.28 0.4
189,166 + 11416 mRNA_3048 0.28 0.5
189,173 + 11416 mRNA_3048 0.28 0.3
189,179 + 11416 mRNA_3048 0.29 1.4
189,202 + 11416 mRNA_3048 0.30 0.5
189,205 - 11416 mRNA_3048 0.30 0.3
189,206 - 11416 mRNA_3048 0.30 -0.8
189,228 - 11416 mRNA_3048 0.31 -1.8
189,239 + 11416 mRNA_3048 0.32 0.5
189,246 + 11416 mRNA_3048 0.32 -0.4