Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3029

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3028: 11396 - Hypothetical Protein, at 132999 to 134584 11396 mRNA_3029: 11397 - K14688 SLC30A1, ZNT1 solute carrier family 30 (zinc transporter), member 1, at 134923 to 137066 11397 mRNA_3030: 11398 - Hypothetical Protein, at 137392 to 137958 11398

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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134,275 + 11396 mRNA_3028 0.80 -1.0
134,286 + 11396 mRNA_3028 0.81 0.8
134,586 - 0.8
134,616 - 0.6
134,641 - -0.8
134,649 + -0.9
134,808 - -1.6
134,828 + -1.2
134,904 + 1.1
134,917 + -1.8
134,919 + -0.0
134,926 - -0.3
135,245 - 11397 mRNA_3029 0.15 -0.6
135,392 + 11397 mRNA_3029 0.22 -0.7
135,514 + 11397 mRNA_3029 0.28 -0.6
135,671 + 11397 mRNA_3029 0.35 1.7
135,821 + 11397 mRNA_3029 0.42 -1.2
135,947 - 11397 mRNA_3029 0.48 -1.7
136,128 + 11397 mRNA_3029 0.56 1.8
136,530 - 11397 mRNA_3029 0.75 -1.9
136,541 + 11397 mRNA_3029 0.75 1.1
136,674 + 11397 mRNA_3029 0.82 0.1
136,697 + 11397 mRNA_3029 0.83 1.1
136,822 + 11397 mRNA_3029 0.89 -1.0
136,965 - 0.5
136,983 - -0.5
137,111 + 0.1
137,122 + -2.3
137,123 + 0.3
137,123 - -0.0
137,135 - -0.9
137,142 + 1.0
137,146 + 0.0
137,147 + -1.8
137,279 - 1.1
137,298 - -0.1
137,304 + -0.1
137,325 - -0.4
137,420 - -0.6
137,429 + 0.2
137,467 - 11398 mRNA_3030 0.13 -0.9
137,521 - 11398 mRNA_3030 0.23 0.7
137,566 - 11398 mRNA_3030 0.31 0.3
137,864 - 11398 mRNA_3030 0.83 0.2
137,872 - 11398 mRNA_3030 0.85 2.1
137,882 - 11398 mRNA_3030 0.86 -0.8
137,918 + -0.1
138,012 - -1.0