Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3006

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3005: 11373 - K19708 PTC6, AUP1 protein phosphatase PTC6, at 54754 to 56074 11373 mRNA_3006: 11374 - K03259 EIF4E translation initiation factor 4E, at 56733 to 57511 11374 mRNA_3007: 11375 - K15119 SLC25A39_40 solute carrier family 25, member 39/40, at 57781 to 59867 11375

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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55,962 + 2.3
55,991 + -0.2
56,184 - 0.6
56,241 + 0.7
56,532 + 1.6
56,572 + -3.9
56,723 - 1.2
56,876 + 11374 mRNA_3006 0.18 0.3
56,979 + 11374 mRNA_3006 0.32 -0.0
57,117 - 11374 mRNA_3006 0.49 0.7
57,261 + 11374 mRNA_3006 0.68 0.1
57,408 - 11374 mRNA_3006 0.87 0.0
57,414 + 11374 mRNA_3006 0.87 1.8
57,416 - 11374 mRNA_3006 0.88 -0.3
57,551 + 0.4
57,591 - -0.7
57,699 - -0.0
57,718 - -0.4
57,721 + -0.0
57,763 - -1.5
57,848 + -0.1