Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2971

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2970: 11338 - K00219 fadH 2,4-dienoyl-CoA reductase (NADPH2), at 682650 to 684031 11338 mRNA_2971: 11339 - HMMPfam-Anp1-PF03452,SUPERFAMILY--SSF53448, at 684112 to 685866 11339 mRNA_2972: 11340 - K03850 ALG10 alpha-1,2-glucosyltransferase, at 686136 to 688131 11340

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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683,199 - 11338 mRNA_2970 0.40 -0.3
683,290 + 11338 mRNA_2970 0.46 0.6
683,293 - 11338 mRNA_2970 0.47 0.2
683,302 + 11338 mRNA_2970 0.47 -0.5
683,322 - 11338 mRNA_2970 0.49 0.3
683,407 - 11338 mRNA_2970 0.55 -1.9
683,407 - 11338 mRNA_2970 0.55 0.9
683,408 - 11338 mRNA_2970 0.55 -0.7
683,421 + 11338 mRNA_2970 0.56 -0.8
683,429 - 11338 mRNA_2970 0.56 -0.3
683,595 - 11338 mRNA_2970 0.68 1.8
683,752 + 11338 mRNA_2970 0.80 0.1
683,787 + 11338 mRNA_2970 0.82 0.1
683,795 - 11338 mRNA_2970 0.83 0.4
683,798 + 11338 mRNA_2970 0.83 -1.8
683,844 - 11338 mRNA_2970 0.86 -0.2
683,862 + 11338 mRNA_2970 0.88 -0.5
683,865 - 11338 mRNA_2970 0.88 1.4
683,896 - 2.9
684,027 - 0.0
684,083 + -0.8
684,294 - 11339 mRNA_2971 0.10 -1.0
684,354 + 11339 mRNA_2971 0.14 1.1
684,498 + 11339 mRNA_2971 0.22 1.6
684,604 + 11339 mRNA_2971 0.28 -0.3
684,633 + 11339 mRNA_2971 0.30 1.0
684,642 - 11339 mRNA_2971 0.30 1.8
684,653 - 11339 mRNA_2971 0.31 0.6
684,673 + 11339 mRNA_2971 0.32 0.3
684,778 + 11339 mRNA_2971 0.38 0.8
684,788 - 11339 mRNA_2971 0.39 -1.4
684,816 - 11339 mRNA_2971 0.40 1.8
684,816 - 11339 mRNA_2971 0.40 -1.9
684,819 + 11339 mRNA_2971 0.40 -0.6
684,926 + 11339 mRNA_2971 0.46 -1.1
684,968 - 11339 mRNA_2971 0.49 0.1
685,026 - 11339 mRNA_2971 0.52 0.8
685,026 - 11339 mRNA_2971 0.52 -0.7
685,029 - 11339 mRNA_2971 0.52 0.4
685,174 - 11339 mRNA_2971 0.61 0.2
685,357 - 11339 mRNA_2971 0.71 1.7
685,368 + 11339 mRNA_2971 0.72 -0.5
685,374 - 11339 mRNA_2971 0.72 0.3
685,392 + 11339 mRNA_2971 0.73 1.9
685,496 - 11339 mRNA_2971 0.79 -0.5
685,536 + 11339 mRNA_2971 0.81 1.3
685,597 + 11339 mRNA_2971 0.85 0.2
685,598 + 11339 mRNA_2971 0.85 0.5
685,599 - 11339 mRNA_2971 0.85 1.4
685,601 - 11339 mRNA_2971 0.85 0.2
685,601 - 11339 mRNA_2971 0.85 1.1
685,641 - 11339 mRNA_2971 0.87 -0.0
685,687 - 11339 mRNA_2971 0.90 -0.0
685,688 - 11339 mRNA_2971 0.90 0.6
685,697 - -1.1
685,756 - -1.2
685,778 + -0.1
685,785 + 0.3
685,801 - -0.6
685,812 + -1.9
685,854 + 2.0
685,905 - -0.5
685,958 + -0.7
685,967 + -0.1
685,974 - 0.3
686,118 - -0.6
686,119 - 0.1
686,164 + 1.6
686,164 + 0.0
686,218 - -0.6
686,221 - -0.3
686,281 - -0.4
686,286 + 1.2
686,460 + 11340 mRNA_2972 0.16 0.3
686,503 - 11340 mRNA_2972 0.18 0.6
686,542 + 11340 mRNA_2972 0.20 1.3
686,744 - 11340 mRNA_2972 0.30 -1.2