Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2968

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2967: 11335 - Hypothetical Protein, at 671807 to 673227 11335 mRNA_2968: 11336 - Hypothetical Protein, at 673383 to 681780 11336 mRNA_2969: 11337 - Hypothetical Protein, at 682054 to 682344 11337 mRNA_2970: 11338 - K00219 fadH 2,4-dienoyl-CoA reductase (NADPH2), at 682650 to 684031 11338

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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672,432 - 11335 mRNA_2967 0.44 0.3
672,440 + 11335 mRNA_2967 0.45 0.5
672,457 - 11335 mRNA_2967 0.46 0.0
672,563 - 11335 mRNA_2967 0.53 -0.2
672,594 + 11335 mRNA_2967 0.55 -0.4
672,627 + 11335 mRNA_2967 0.58 0.0
672,766 - 11335 mRNA_2967 0.67 0.7
672,800 - 11335 mRNA_2967 0.70 1.1
672,806 + 11335 mRNA_2967 0.70 0.0
672,859 - 11335 mRNA_2967 0.74 -0.5
673,013 - 11335 mRNA_2967 0.85 0.5
673,030 + 11335 mRNA_2967 0.86 -0.4
673,186 - -0.5
673,219 + -0.1
673,343 + 1.7
673,353 + 1.3
673,441 - 0.8
673,555 - -0.1
673,614 - -0.1
673,624 + -1.1
673,627 - -1.5
673,645 + 1.4
673,807 - 1.4
673,841 - -0.7
673,983 - 1.0
673,995 + 0.5
674,045 - 1.3
674,086 - -0.7
674,122 + 0.2
674,383 + 11336 mRNA_2968 0.12 -1.1
674,386 - 11336 mRNA_2968 0.12 -1.4
674,454 - 11336 mRNA_2968 0.13 0.3
674,529 - 11336 mRNA_2968 0.14 0.3
674,636 + 11336 mRNA_2968 0.15 0.1
674,638 + 11336 mRNA_2968 0.15 2.1
674,702 - 11336 mRNA_2968 0.16 0.2
674,748 + 11336 mRNA_2968 0.16 -0.1
674,762 + 11336 mRNA_2968 0.16 -2.0
674,812 - 11336 mRNA_2968 0.17 0.5
674,815 + 11336 mRNA_2968 0.17 0.3
674,818 - 11336 mRNA_2968 0.17 1.3
674,859 - 11336 mRNA_2968 0.18 -0.0
674,998 - 11336 mRNA_2968 0.19 0.4
675,079 + 11336 mRNA_2968 0.20 -0.2
675,112 + 11336 mRNA_2968 0.21 -1.7
675,112 + 11336 mRNA_2968 0.21 -0.4
675,154 + 11336 mRNA_2968 0.21 0.4
675,371 + 11336 mRNA_2968 0.24 -2.7
675,395 + 11336 mRNA_2968 0.24 -0.3
675,495 + 11336 mRNA_2968 0.25 1.4
675,804 + 11336 mRNA_2968 0.29 -0.8
675,805 - 11336 mRNA_2968 0.29 1.9
675,810 + 11336 mRNA_2968 0.29 0.3
675,827 - 11336 mRNA_2968 0.29 1.1
675,835 - 11336 mRNA_2968 0.29 -1.2
675,952 - 11336 mRNA_2968 0.31 0.2
675,998 + 11336 mRNA_2968 0.31 -0.6
676,002 + 11336 mRNA_2968 0.31 0.1
676,019 - 11336 mRNA_2968 0.31 -0.4
676,024 + 11336 mRNA_2968 0.31 1.9
676,027 - 11336 mRNA_2968 0.31 1.6
676,094 - 11336 mRNA_2968 0.32 1.4
676,153 + 11336 mRNA_2968 0.33 -0.2
676,322 - 11336 mRNA_2968 0.35 0.7
676,384 - 11336 mRNA_2968 0.36 1.5
676,385 + 11336 mRNA_2968 0.36 1.5
676,425 + 11336 mRNA_2968 0.36 -0.4
676,572 + 11336 mRNA_2968 0.38 -2.0
676,575 - 11336 mRNA_2968 0.38 -1.8
676,581 - 11336 mRNA_2968 0.38 1.7
676,682 + 11336 mRNA_2968 0.39 -0.4
676,719 - 11336 mRNA_2968 0.40 -1.5
676,814 + 11336 mRNA_2968 0.41 0.3
676,887 - 11336 mRNA_2968 0.42 -0.7
676,998 - 11336 mRNA_2968 0.43 -0.0
677,028 - 11336 mRNA_2968 0.43 -1.0
677,073 + 11336 mRNA_2968 0.44 -0.4
677,151 + 11336 mRNA_2968 0.45 -0.0
677,273 + 11336 mRNA_2968 0.46 1.5
677,323 + 11336 mRNA_2968 0.47 3.2
677,405 - 11336 mRNA_2968 0.48 -1.0
677,448 - 11336 mRNA_2968 0.48 -1.5
677,724 - 11336 mRNA_2968 0.52 0.2
677,796 + 11336 mRNA_2968 0.53 0.8
677,897 - 11336 mRNA_2968 0.54 0.7
677,900 - 11336 mRNA_2968 0.54 -0.5
677,904 + 11336 mRNA_2968 0.54 -0.7
677,907 + 11336 mRNA_2968 0.54 -0.2
677,913 + 11336 mRNA_2968 0.54 0.9
677,933 + 11336 mRNA_2968 0.54 0.5
678,062 - 11336 mRNA_2968 0.56 -1.7
678,160 - 11336 mRNA_2968 0.57 1.7
678,161 - 11336 mRNA_2968 0.57 -1.0
678,166 - 11336 mRNA_2968 0.57 -0.1
678,364 - 11336 mRNA_2968 0.59 1.6
678,417 + 11336 mRNA_2968 0.60 -1.9
678,520 - 11336 mRNA_2968 0.61 -0.7
678,590 - 11336 mRNA_2968 0.62 -3.2
678,747 - 11336 mRNA_2968 0.64 -0.5
678,749 - 11336 mRNA_2968 0.64 1.9
678,769 - 11336 mRNA_2968 0.64 1.0
678,781 + 11336 mRNA_2968 0.64 0.1
678,908 - 11336 mRNA_2968 0.66 0.2
679,011 + 11336 mRNA_2968 0.67 0.4
679,047 - 11336 mRNA_2968 0.67 0.7
679,047 + 11336 mRNA_2968 0.67 -1.5
679,059 + 11336 mRNA_2968 0.68 0.0
679,068 + 11336 mRNA_2968 0.68 2.1
679,070 + 11336 mRNA_2968 0.68 -0.9
679,079 + 11336 mRNA_2968 0.68 -0.5
679,218 - 11336 mRNA_2968 0.69 0.8
679,223 + 11336 mRNA_2968 0.70 -0.5
679,234 + 11336 mRNA_2968 0.70 -2.1
679,258 + 11336 mRNA_2968 0.70 1.0
679,318 + 11336 mRNA_2968 0.71 2.0
679,354 - 11336 mRNA_2968 0.71 -0.5
679,369 + 11336 mRNA_2968 0.71 2.2
679,381 + 11336 mRNA_2968 0.71 -2.3
679,527 - 11336 mRNA_2968 0.73 1.5
679,682 + 11336 mRNA_2968 0.75 1.3
679,683 + 11336 mRNA_2968 0.75 0.7
679,683 + 11336 mRNA_2968 0.75 -1.8
679,761 + 11336 mRNA_2968 0.76 -0.3
679,829 + 11336 mRNA_2968 0.77 -0.6
679,914 - 11336 mRNA_2968 0.78 -0.6
679,925 + 11336 mRNA_2968 0.78 -1.3
679,929 - 11336 mRNA_2968 0.78 1.0
679,930 + 11336 mRNA_2968 0.78 2.2
679,932 - 11336 mRNA_2968 0.78 1.4
679,990 + 11336 mRNA_2968 0.79 -1.1
680,097 + 11336 mRNA_2968 0.80 1.0
680,111 - 11336 mRNA_2968 0.80 -0.3
680,189 - 11336 mRNA_2968 0.81 -0.3
680,223 + 11336 mRNA_2968 0.81 0.2
680,223 - 11336 mRNA_2968 0.81 1.2
680,284 - 11336 mRNA_2968 0.82 -1.9
680,365 - 11336 mRNA_2968 0.83 -0.8
680,526 - 11336 mRNA_2968 0.85 0.9
680,529 - 11336 mRNA_2968 0.85 -0.3
680,635 + 11336 mRNA_2968 0.86 1.0
680,730 + 11336 mRNA_2968 0.87 -0.1
680,735 - 11336 mRNA_2968 0.88 1.3
680,865 - 11336 mRNA_2968 0.89 0.2
680,883 + 11336 mRNA_2968 0.89 -0.7
680,892 + 11336 mRNA_2968 0.89 -0.3
680,903 + 11336 mRNA_2968 0.90 1.1
680,921 - 11336 mRNA_2968 0.90 0.6
680,982 - 0.2
680,982 - -1.7
681,063 - -2.9
681,224 - 0.3
681,232 - -0.5
681,232 - 0.3
681,245 + -1.3
681,251 - -0.2
681,347 + 1.2
681,367 - 2.9
681,440 + -0.3
681,511 - 0.6
681,512 + 0.2
681,563 + 0.0
681,647 + 0.7
681,662 + -0.8
681,675 + 0.6
681,762 - 0.0
681,762 - -0.3
681,765 + 0.9
681,824 - -1.3
681,951 + 0.5
681,961 - 0.5
681,962 + 0.2
682,008 - -0.8
682,253 - 11337 mRNA_2969 0.68 -0.1
682,265 - 11337 mRNA_2969 0.73 0.6
682,282 + 11337 mRNA_2969 0.78 0.2
682,397 - 0.2
682,527 - -0.4
682,542 - -2.0
682,549 + -1.4
682,585 - 1.1
682,587 - -0.2
682,588 + -0.9
682,779 - 0.5