Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2961

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2960: 11328 - KOG2617 Citrate synthase, at 653159 to 654002 11328 mRNA_2961: 11329 - ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 654993 to 657914 11329 mRNA_2962: 11330 - KOG3841 TEF-1 and related transcription factor, TEAD family, at 658359 to 659860 11330

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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654,382 + 0.4
654,495 - -1.4
654,517 - 1.3
654,672 + -0.4
654,931 - -0.7
654,942 + -0.1
655,078 + -0.9
655,367 - 11329 mRNA_2961 0.13 -0.6
655,383 + 11329 mRNA_2961 0.13 0.1
655,997 + 11329 mRNA_2961 0.34 -1.9
656,285 - 11329 mRNA_2961 0.44 -0.8
656,581 - 11329 mRNA_2961 0.54 -1.2
656,705 + 11329 mRNA_2961 0.59 -1.0
656,827 - 11329 mRNA_2961 0.63 -3.7
656,842 + 11329 mRNA_2961 0.63 -1.2
657,278 + 11329 mRNA_2961 0.78 -0.5
657,291 - 11329 mRNA_2961 0.79 -2.4
657,339 - 11329 mRNA_2961 0.80 2.4
657,402 - 11329 mRNA_2961 0.82 -0.9
657,470 - 11329 mRNA_2961 0.85 1.2
657,599 + 11329 mRNA_2961 0.89 0.4
657,740 - -1.5
657,876 + 1.7
657,889 + -0.7
657,890 + -0.9
658,044 + -0.5
658,120 + -0.8
658,129 - -0.0
658,174 - -0.9
658,175 + 0.7
658,193 - 0.2
658,294 + 2.1
658,297 - 0.5
658,344 - 0.9
658,506 - 1.0
658,513 - 11330 mRNA_2962 0.10 0.2
658,587 - 11330 mRNA_2962 0.15 -0.5
658,595 + 11330 mRNA_2962 0.16 -0.3
658,645 + 11330 mRNA_2962 0.19 0.4
658,791 - 11330 mRNA_2962 0.29 0.2
658,886 + 11330 mRNA_2962 0.35 0.3