Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2940

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2939: 11307 - K17807 TAM41, MMP37 mitochondrial translocator assembly and maintenance protein 41, at 601286 to 603136 11307 mRNA_2940: 11308 - SUPERFAMILY--SSF56300, at 604040 to 607064 11308 mRNA_2941: 11309 - BLAST IncA domain protein [Rhizoctonia solani AG-3 Rhs1AP], at 607263 to 608329 11309

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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603,214 - 0.1
603,219 + -0.9
603,388 + -1.4
603,390 - 0.2
603,396 - -2.6
603,514 + 0.2
603,517 - -1.0
603,527 + 1.0
603,528 + 0.2
603,536 + 0.4
603,539 + 0.1
603,546 + -0.1
603,700 - 0.3
603,712 - -2.0
603,713 + 0.0
603,716 - -1.1
603,724 + 1.6
603,741 - -0.4
603,742 + -0.6
603,750 + 0.0
603,764 - 0.1
603,814 - -1.2
603,830 - 2.2
603,831 + 1.7
603,839 + 0.6
603,839 - 0.5
603,842 + -0.0
603,848 - -0.1
603,872 + -1.2
603,888 + 0.0
603,995 - -0.1
604,286 + -0.7
604,300 + 2.8
604,821 + 11308 mRNA_2940 0.26 -0.2
604,899 - 11308 mRNA_2940 0.28 -2.9
604,908 + 11308 mRNA_2940 0.29 0.8
605,438 - 11308 mRNA_2940 0.46 0.5
605,686 - 11308 mRNA_2940 0.54 -0.0
605,837 + 11308 mRNA_2940 0.59 -1.9
605,891 + 11308 mRNA_2940 0.61 0.6
606,169 - 11308 mRNA_2940 0.70 -1.3
606,171 + 11308 mRNA_2940 0.70 -0.4
606,207 - 11308 mRNA_2940 0.72 -0.4
606,342 - 11308 mRNA_2940 0.76 0.1
606,590 - 11308 mRNA_2940 0.84 -0.9
606,657 + 11308 mRNA_2940 0.87 -0.8
606,795 - 0.9
607,037 - -2.9
607,152 + -0.1
607,202 + 0.2
607,498 - 11309 mRNA_2941 0.22 0.7
607,615 - 11309 mRNA_2941 0.33 0.1
607,649 - 11309 mRNA_2941 0.36 -0.1
607,948 + 11309 mRNA_2941 0.64 1.8