Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2902

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2901: 11269 - KOG1289 Amino acid transporters, at 494917 to 497480 11269 mRNA_2902: 11270 - K20367 ERGIC3, ERV46 endoplasmic reticulum-Golgi intermediate compartment protein 3, at 498164 to 500409 11270 mRNA_2903: 11271 - K06662 HRAD17, RAD24 cell cycle checkpoint protein, at 500559 to 503580 11271

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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497,175 - 11269 mRNA_2901 0.88 0.3
497,180 + 11269 mRNA_2901 0.88 1.0
497,457 - -0.4
497,725 + -0.5
497,886 + -1.9
497,917 + 2.5
497,935 + 0.4
497,999 - -0.6
498,064 - 0.7
498,101 - -1.1
498,191 - -0.3
498,232 - -1.5
498,517 + 11270 mRNA_2902 0.16 0.2
498,599 + 11270 mRNA_2902 0.19 0.4
499,061 - 11270 mRNA_2902 0.40 -2.4
499,097 + 11270 mRNA_2902 0.42 -0.4
499,634 - 11270 mRNA_2902 0.65 1.0
499,639 - 11270 mRNA_2902 0.66 -0.6
499,926 + 11270 mRNA_2902 0.78 1.4
500,182 + 11270 mRNA_2902 0.90 0.6
500,489 + 1.2
500,671 - 2.1
500,800 - -1.4
500,800 - -0.8
500,972 - 11271 mRNA_2903 0.14 -0.4
501,261 - 11271 mRNA_2903 0.23 0.4