Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2873

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2872: 11240 - HMMPfam-Pyridine nucleotide-disulphide oxidoreductase-PF00070,PRINTS-FAD-dependent pyridine nucleotide reductase signature-PR00368,PRINTS-Pyridine nucleotide disulphide reductase class-I signature-PR00411,SUPERFAMILY--SSF51905, at 412487 to 414015 11240 mRNA_2873: 11241 - HMMPfam-Yeast cortical protein KAR9-PF08580,ProSiteProfiles-GAR domain profile.-PS51460,SUPERFAMILY--SSF143575, at 414211 to 417159 11241 mRNA_2874: 11242 - K00555 TRMT1, trm1 tRNA (guanine26-N2/guanine27-N2)-dimethyltransferase, at 417421 to 420167 11242

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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413,579 - 11240 mRNA_2872 0.71 -0.9
413,636 + 11240 mRNA_2872 0.75 -0.3
413,685 + 11240 mRNA_2872 0.78 0.3
413,763 + 11240 mRNA_2872 0.83 -1.6
413,775 + 11240 mRNA_2872 0.84 1.6
413,884 + 0.1
414,035 - -1.9
414,053 + 0.1
414,219 - 1.3
414,225 + 2.3
414,313 + 0.7
414,605 - 11241 mRNA_2873 0.13 0.3
414,720 - 11241 mRNA_2873 0.17 -0.8
414,815 - 11241 mRNA_2873 0.20 0.4
414,898 + 11241 mRNA_2873 0.23 -0.0
415,153 - 11241 mRNA_2873 0.32 1.5
415,475 + 11241 mRNA_2873 0.43 -0.2
416,056 - 11241 mRNA_2873 0.63 2.8
416,060 - 11241 mRNA_2873 0.63 -2.3
416,080 + 11241 mRNA_2873 0.63 0.7
416,160 + 11241 mRNA_2873 0.66 0.7
416,407 - 11241 mRNA_2873 0.74 0.6
416,511 - 11241 mRNA_2873 0.78 0.3
416,655 + 11241 mRNA_2873 0.83 2.8
416,776 + 11241 mRNA_2873 0.87 -0.5
416,954 + 1.5
417,076 - 0.0
417,083 - -0.5
417,214 - 0.2
417,224 - -0.0
417,232 - 0.3
417,244 + 1.5
417,246 + -0.5
417,250 + 0.5
417,250 - 1.1
417,251 + 1.4
417,252 + -0.2
417,260 - 1.9
417,261 - -1.6
417,380 - 1.1
417,582 + -0.2
417,679 - 0.3
417,713 + 11242 mRNA_2874 0.11 0.2