Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2854

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2853: 11221 - BLAST transmembrane protein, putative [Rhizoctonia solani A..., at 368272 to 370458 11221 mRNA_2854: 11222 - KOG2084 Predicted histone tail methylase containing SET domain, at 371099 to 373142 11222 mRNA_2855: 11223 - K10747 LIG1 DNA ligase 1, at 373741 to 377451 11223

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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370,191 + 11221 mRNA_2853 0.88 0.8
370,236 + 11221 mRNA_2853 0.90 -0.4
370,240 + 1.6
370,241 - -0.4
370,257 - -2.2
370,356 - 0.5
370,356 - 1.1
370,409 + 4.0
370,418 + -0.2
370,533 + 0.5
370,564 + -1.1
370,565 - 0.3
370,655 + -2.2
370,679 + -0.2
370,686 + -1.0
370,737 + -2.3
370,851 + 1.0
370,864 + 0.7
370,971 - -0.0
370,990 + -1.9
370,993 + 1.2
371,009 - -1.1
371,059 - 0.2
371,177 - 0.2
371,184 - -0.9
371,376 + 11222 mRNA_2854 0.14 0.5
371,788 + 11222 mRNA_2854 0.34 -0.5
371,902 + 11222 mRNA_2854 0.39 -2.0
371,913 + 11222 mRNA_2854 0.40 -0.8
372,024 - 11222 mRNA_2854 0.45 0.6
372,308 + 11222 mRNA_2854 0.59 -0.5
372,463 + 11222 mRNA_2854 0.67 2.1
372,739 - 11222 mRNA_2854 0.80 -2.0
372,781 + 11222 mRNA_2854 0.82 -2.0
372,908 - 11222 mRNA_2854 0.89 0.8
373,078 - -1.7
373,194 + -0.8
373,210 + 3.6
373,375 - -0.2
373,480 + 2.1
373,537 + 1.9
373,669 - 0.7
373,692 - 0.5
373,819 - -0.4
373,857 + -0.8