Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2800

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2799: 11167 - K01897 ACSL, fadD long-chain acyl-CoA synthetase, at 242336 to 245006 11167 mRNA_2800: 11168 - SUPERFAMILY--SSF52047, at 245486 to 250213 11168 mRNA_2801: 11169 - Hypothetical Protein, at 250557 to 251555 11169

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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244,595 - 11167 mRNA_2799 0.85 -2.1
244,891 - -0.2
244,894 - -1.0
244,897 - -0.1
244,911 + 1.1
244,915 - -1.1
244,920 + -0.2
244,934 - 0.9
244,953 + -0.0
244,959 + -0.5
245,047 + 1.1
245,058 - 0.6
245,058 + -0.6
245,061 - 0.5
245,079 + -1.0
245,081 + 0.3
245,083 - -0.9
245,083 + 0.5
245,085 + -0.7
245,091 + -1.3
245,092 + 1.3
245,100 - 0.3
245,105 - -1.5
245,111 - 0.0
245,117 + 0.4
245,175 - 0.5
245,183 + 0.2
245,184 - 0.2
245,195 - -0.3
245,212 - 0.7
245,216 + 1.5
245,222 + -0.9
245,222 - 2.9
245,226 + -0.3
245,369 - 0.4
245,532 + 1.1
245,626 + -0.5
245,669 + 0.7
245,677 - -1.0
245,769 - 0.8
245,770 + 2.0
245,816 + 0.5
245,843 + -0.2
245,849 + -0.0
245,885 - -0.0
245,936 - 2.0
246,089 - 11168 mRNA_2800 0.13 0.1
246,090 - 11168 mRNA_2800 0.13 1.1
246,106 + 11168 mRNA_2800 0.13 -0.3
246,125 - 11168 mRNA_2800 0.14 1.0
246,230 - 11168 mRNA_2800 0.16 2.3
246,497 - 11168 mRNA_2800 0.21 0.4
246,631 - 11168 mRNA_2800 0.24 0.6
246,653 - 11168 mRNA_2800 0.25 -0.1
246,683 + 11168 mRNA_2800 0.25 -0.6
246,688 - 11168 mRNA_2800 0.25 0.4
246,708 + 11168 mRNA_2800 0.26 0.1
246,942 - 11168 mRNA_2800 0.31 -0.4
246,943 + 11168 mRNA_2800 0.31 0.5
246,980 - 11168 mRNA_2800 0.32 1.8
247,168 - 11168 mRNA_2800 0.36 0.4
247,230 - 11168 mRNA_2800 0.37 -2.3
247,241 + 11168 mRNA_2800 0.37 -0.8
247,265 + 11168 mRNA_2800 0.38 0.2
247,268 - 11168 mRNA_2800 0.38 1.4
247,292 + 11168 mRNA_2800 0.38 -1.0
247,300 + 11168 mRNA_2800 0.38 -0.9
247,403 - 11168 mRNA_2800 0.41 -0.1
247,405 + 11168 mRNA_2800 0.41 -0.7
247,524 - 11168 mRNA_2800 0.43 -0.2
247,565 + 11168 mRNA_2800 0.44 -1.8
247,569 + 11168 mRNA_2800 0.44 -0.8
247,725 - 11168 mRNA_2800 0.47 -0.6
247,846 - 11168 mRNA_2800 0.50 -0.3
247,890 + 11168 mRNA_2800 0.51 0.2
247,986 - 11168 mRNA_2800 0.53 -1.4
248,049 - 11168 mRNA_2800 0.54 0.7
248,411 - 11168 mRNA_2800 0.62 0.8
248,445 + 11168 mRNA_2800 0.63 1.4
248,617 + 11168 mRNA_2800 0.66 -1.1
248,738 + 11168 mRNA_2800 0.69 0.2
249,010 - 11168 mRNA_2800 0.75 0.6
249,051 - 11168 mRNA_2800 0.75 0.8
249,172 - 11168 mRNA_2800 0.78 1.6
249,200 + 11168 mRNA_2800 0.79 -0.2
249,238 - 11168 mRNA_2800 0.79 -0.5
249,476 - 11168 mRNA_2800 0.84 -1.3
249,488 + 11168 mRNA_2800 0.85 -0.5
249,615 + 11168 mRNA_2800 0.87 -0.5
250,034 + 1.5
250,349 + 0.5
250,491 - -0.3
250,601 + 0.1
250,702 + 11169 mRNA_2801 0.15 0.2
250,726 - 11169 mRNA_2801 0.17 -0.8
250,771 - 11169 mRNA_2801 0.21 -1.1
250,810 + 11169 mRNA_2801 0.25 0.2
250,893 - 11169 mRNA_2801 0.34 -0.2
250,930 + 11169 mRNA_2801 0.37 -0.8
251,012 - 11169 mRNA_2801 0.46 -0.9
251,057 + 11169 mRNA_2801 0.50 0.9
251,193 - 11169 mRNA_2801 0.64 -2.8