Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2799

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2798: 11166 - K03537 POP5 ribonuclease P/MRP protein subunit POP5, at 241326 to 242097 11166 mRNA_2799: 11167 - K01897 ACSL, fadD long-chain acyl-CoA synthetase, at 242336 to 245006 11167 mRNA_2800: 11168 - SUPERFAMILY--SSF52047, at 245486 to 250213 11168

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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242,005 - 11166 mRNA_2798 0.88 0.5
242,058 + 1.0
242,522 + 0.5
242,537 + -1.3
242,726 + 11167 mRNA_2799 0.15 0.2
243,124 - 11167 mRNA_2799 0.30 0.3
243,183 - 11167 mRNA_2799 0.32 0.5
243,318 + 11167 mRNA_2799 0.37 -0.1
243,441 - 11167 mRNA_2799 0.41 0.7
243,469 + 11167 mRNA_2799 0.42 0.5
243,504 + 11167 mRNA_2799 0.44 -0.4
243,763 + 11167 mRNA_2799 0.53 1.0
243,849 - 11167 mRNA_2799 0.57 0.2
243,992 - 11167 mRNA_2799 0.62 -0.5
244,114 + 11167 mRNA_2799 0.67 -1.6
244,153 + 11167 mRNA_2799 0.68 -1.2
244,212 - 11167 mRNA_2799 0.70 -0.1
244,313 - 11167 mRNA_2799 0.74 -0.6
244,321 - 11167 mRNA_2799 0.74 -1.1
244,426 - 11167 mRNA_2799 0.78 1.5
244,595 - 11167 mRNA_2799 0.85 -2.1
244,891 - -0.2
244,894 - -1.0
244,897 - -0.1
244,911 + 1.1
244,915 - -1.1
244,920 + -0.2
244,934 - 0.9
244,953 + -0.0
244,959 + -0.5
245,047 + 1.1
245,058 - 0.6
245,058 + -0.6
245,061 - 0.5
245,079 + -1.0
245,081 + 0.3
245,083 - -0.9
245,083 + 0.5
245,085 + -0.7
245,091 + -1.3
245,092 + 1.3
245,100 - 0.3
245,105 - -1.5
245,111 - 0.0
245,117 + 0.4
245,175 - 0.5
245,183 + 0.2
245,184 - 0.2
245,195 - -0.3
245,212 - 0.7
245,216 + 1.5
245,222 + -0.9
245,222 - 2.9
245,226 + -0.3
245,369 - 0.4
245,532 + 1.1
245,626 + -0.5
245,669 + 0.7
245,677 - -1.0
245,769 - 0.8
245,770 + 2.0
245,816 + 0.5
245,843 + -0.2
245,849 + -0.0
245,885 - -0.0
245,936 - 2.0