Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2754

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2753: 11121 - HMMPfam-F-box-like-PF12937, at 139767 to 141011 11121 mRNA_2754: 11122 - SUPERFAMILY--SSF50249, at 141143 to 143248 11122 mRNA_2755: 11123 - K20247 EGT2 hercynylcysteine sulfoxide lyase, at 143517 to 145999 11123

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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140,231 + 11121 mRNA_2753 0.37 -2.6
140,370 + 11121 mRNA_2753 0.48 -0.1
140,418 - 11121 mRNA_2753 0.52 0.5
140,520 - 11121 mRNA_2753 0.60 -1.5
140,679 - 11121 mRNA_2753 0.73 -1.8
140,761 - 11121 mRNA_2753 0.80 -0.1
140,980 + 1.5
141,556 + 11122 mRNA_2754 0.20 -0.4
141,656 + 11122 mRNA_2754 0.24 0.5
141,658 - 11122 mRNA_2754 0.24 -2.1
141,673 - 11122 mRNA_2754 0.25 -0.8
141,886 - 11122 mRNA_2754 0.35 -1.2
141,967 - 11122 mRNA_2754 0.39 0.5
141,975 + 11122 mRNA_2754 0.40 1.9
142,036 + 11122 mRNA_2754 0.42 1.0
142,055 + 11122 mRNA_2754 0.43 -0.2
142,058 - 11122 mRNA_2754 0.43 1.4
142,127 - 11122 mRNA_2754 0.47 -1.0
142,176 - 11122 mRNA_2754 0.49 -0.6
142,423 - 11122 mRNA_2754 0.61 0.2
142,882 - 11122 mRNA_2754 0.83 -1.3
142,993 - 11122 mRNA_2754 0.88 -0.4
143,013 - 11122 mRNA_2754 0.89 1.9
143,024 + 11122 mRNA_2754 0.89 2.9
143,161 - 0.2
143,170 - -1.6
143,238 + -0.2
143,324 + -0.1
143,340 - 0.2
143,466 - -0.3
143,482 + 0.2
143,809 + 11123 mRNA_2755 0.12 -0.5
143,997 + 11123 mRNA_2755 0.19 -0.5
144,167 + 11123 mRNA_2755 0.26 0.5
144,167 + 11123 mRNA_2755 0.26 0.7