Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2753

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2752: 11120 - HMMPfam-F-box-like-PF12937, at 138009 to 139329 11120 mRNA_2753: 11121 - HMMPfam-F-box-like-PF12937, at 139767 to 141011 11121 mRNA_2754: 11122 - SUPERFAMILY--SSF50249, at 141143 to 143248 11122

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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138,870 - 11120 mRNA_2752 0.65 1.9
139,172 - 11120 mRNA_2752 0.88 -1.1
139,193 - 11120 mRNA_2752 0.90 0.2
139,205 - -0.3
139,306 - -0.0
139,327 + -2.1
139,328 - -1.4
139,344 - -0.4
139,392 + -0.9
139,474 + 0.6
139,478 - -0.3
139,482 - 0.2
139,485 + -1.9
139,497 + -0.8
139,505 - -1.1
139,542 + 0.6
139,630 - -2.0
139,643 - -0.0
139,652 - -1.1
139,671 - -0.1
139,713 - 1.1
139,769 - 0.7
139,812 + 0.5
139,912 + 11121 mRNA_2753 0.12 0.2
140,231 + 11121 mRNA_2753 0.37 -2.6
140,370 + 11121 mRNA_2753 0.48 -0.1
140,418 - 11121 mRNA_2753 0.52 0.5
140,520 - 11121 mRNA_2753 0.60 -1.5
140,679 - 11121 mRNA_2753 0.73 -1.8
140,761 - 11121 mRNA_2753 0.80 -0.1
140,980 + 1.5
141,556 + 11122 mRNA_2754 0.20 -0.4
141,656 + 11122 mRNA_2754 0.24 0.5
141,658 - 11122 mRNA_2754 0.24 -2.1
141,673 - 11122 mRNA_2754 0.25 -0.8
141,886 - 11122 mRNA_2754 0.35 -1.2
141,967 - 11122 mRNA_2754 0.39 0.5
141,975 + 11122 mRNA_2754 0.40 1.9