Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2743

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2742: 11110 - K18880 HCD1 very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase, at 117665 to 118794 11110 mRNA_2743: 11111 - KOG4491 Predicted membrane protein, at 119009 to 120330 11111 mRNA_2744: 11112 - K20798 HENMT1 small RNA 2'-O-methyltransferase, at 120762 to 122799 11112

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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118,526 + 11110 mRNA_2742 0.76 0.5
118,612 - 11110 mRNA_2742 0.84 -1.7
118,613 + 11110 mRNA_2742 0.84 1.8
118,627 + 11110 mRNA_2742 0.85 -1.4
118,769 + 0.1
118,890 - -0.3
118,893 - -0.2
118,894 - -0.7
118,896 + -2.1
118,897 + -1.5
118,910 - -3.2
118,916 - -0.3
118,959 - -1.0
119,078 + 1.3
119,078 - 1.9
119,322 + 11111 mRNA_2743 0.24 2.0
119,528 - 11111 mRNA_2743 0.39 1.0
119,657 - 11111 mRNA_2743 0.49 -0.3
119,743 - 11111 mRNA_2743 0.56 0.2
119,788 - 11111 mRNA_2743 0.59 -0.3
119,796 - 11111 mRNA_2743 0.60 0.8
119,796 + 11111 mRNA_2743 0.60 -0.4
119,940 - 11111 mRNA_2743 0.70 -0.0
120,072 - 11111 mRNA_2743 0.80 -1.9
120,088 - 11111 mRNA_2743 0.82 -0.4
120,097 + 11111 mRNA_2743 0.82 -0.2
120,099 + 11111 mRNA_2743 0.82 -0.6
120,105 + 11111 mRNA_2743 0.83 -0.4
120,246 - 0.2
120,249 + -1.9
120,251 + 0.5
120,516 - -0.0
120,561 + -0.4
120,570 - 0.3
120,700 - -0.3
120,701 + 1.7
120,734 + 0.5
120,827 - 2.4
120,841 - 0.6
120,853 + -0.5
120,860 - -1.2
121,129 - 11112 mRNA_2744 0.18 -1.2