Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2702

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2701: 11069 - HMMPfam-Glycosyltransferase sugar-binding region containing DXD motif-PF04488,SUPERFAMILY--SSF53448, at 37743 to 40782 11069 mRNA_2702: 11070 - BLAST TRAF-like [Xanthophyllomyces dendrorhous], at 41116 to 42334 11070 mRNA_2703: 11071 - Hypothetical Protein, at 42633 to 43267 11071

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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40,982 + 0.1
41,019 + 1.3
41,025 + 0.3
41,027 - -0.0
41,034 - -0.6
41,056 - 1.1
41,082 - 0.1
41,198 + 2.1
41,316 + 11070 mRNA_2702 0.16 -1.0
41,582 - 11070 mRNA_2702 0.38 -0.3
41,677 + 11070 mRNA_2702 0.46 0.2
41,716 + 11070 mRNA_2702 0.49 0.2
41,746 - 11070 mRNA_2702 0.52 2.4
41,800 - 11070 mRNA_2702 0.56 -2.1
41,909 + 11070 mRNA_2702 0.65 -0.4
41,912 - 11070 mRNA_2702 0.65 -0.6
41,925 + 11070 mRNA_2702 0.66 0.6
42,073 - 11070 mRNA_2702 0.79 1.5
42,181 + 11070 mRNA_2702 0.87 -0.1
42,240 + -1.6
42,267 + -0.8
42,267 - 0.6
42,267 - 0.7
42,377 - 2.7
42,466 - -0.5
42,566 - 1.1
42,617 - -0.5
42,669 + -0.0
42,952 + 11071 mRNA_2703 0.50 0.1
42,953 + 11071 mRNA_2703 0.50 -0.8
42,958 + 11071 mRNA_2703 0.51 -0.5
42,964 - 11071 mRNA_2703 0.52 -0.1
42,968 - 11071 mRNA_2703 0.53 -2.2
43,098 - 11071 mRNA_2703 0.73 0.8
43,130 - 11071 mRNA_2703 0.78 -1.4
43,249 + 1.4
43,249 - -0.9