Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2694

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2693: 11061 - K18470 ARHGAP1, CDC42GAP Rho GTPase-activating protein 1, at 18614 to 20530 11061 mRNA_2694: 11062 - HMMPfam-BTB/POZ domain-PF00651,ProSiteProfiles-BTB domain profile.-PS50097,SUPERFAMILY--SSF49599,SUPERFAMILY--SSF54695, at 20926 to 22511 11062

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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20,002 + 11061 mRNA_2693 0.72 0.4
20,007 + 11061 mRNA_2693 0.73 -1.8
20,031 - 11061 mRNA_2693 0.74 -0.7
20,074 + 11061 mRNA_2693 0.76 0.4
20,079 + 11061 mRNA_2693 0.76 0.2
20,123 + 11061 mRNA_2693 0.79 -0.1
20,310 - 11061 mRNA_2693 0.88 1.3
20,466 - -1.0
20,610 - 0.2
20,614 - 0.5
20,616 - 0.4
20,617 - 0.2
20,628 + -0.2
20,664 + -0.6
20,707 + 3.1
20,724 + -0.6
20,765 - -1.2
20,784 - -0.6
20,792 - -0.7
20,922 - -1.1
20,923 + 1.6
20,930 + 0.3
20,935 + -0.5
20,959 - 1.1
20,959 - 0.5
20,960 - -1.0
20,960 - 0.3
20,966 + 0.9
20,972 - 0.2
20,979 + 1.6
21,305 - 11062 mRNA_2694 0.24 0.3
21,312 + 11062 mRNA_2694 0.24 0.9
21,358 + 11062 mRNA_2694 0.27 0.4
21,372 - 11062 mRNA_2694 0.28 -0.4
21,834 - 11062 mRNA_2694 0.57 -1.7
22,077 + 11062 mRNA_2694 0.73 -0.2
22,194 + 11062 mRNA_2694 0.80 0.8
22,197 - 11062 mRNA_2694 0.80 0.3
22,234 - 11062 mRNA_2694 0.82 0.4
22,318 + 11062 mRNA_2694 0.88 -1.8
22,460 - -0.2
22,535 + -0.2
22,547 - -0.4
22,584 + -0.7
22,644 - 0.1
22,653 - 0.3
22,664 + 0.7
22,664 + -0.0
22,669 - -0.6
22,682 + -0.2
22,826 - 0.2
22,834 + 0.3
22,975 - 1.5
22,975 - 1.4
23,076 + 0.0
23,235 - 1.4
23,391 - -0.1
23,404 - 0.6
23,406 - 0.9
23,412 - -1.7
23,429 + -1.7
23,435 - -1.0