Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2682

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2681: 11049 - Hypothetical Protein, at 765943 to 766697 11049 mRNA_2682: 11050 - K00589 MET1 uroporphyrin-III C-methyltransferase, at 767694 to 769770 11050 mRNA_2683: 11051 - K07300 chaA, CAX Ca2+-H+ antiporter, at 769946 to 774939 11051

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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767,204 + 2.6
767,220 + 0.3
767,234 + 0.7
767,451 - 0.6
767,471 - -1.0
767,471 + 0.4
767,556 + 2.7
767,578 + 1.2
767,780 + -1.9
768,242 - 11050 mRNA_2682 0.26 -0.1
768,350 - 11050 mRNA_2682 0.32 1.9
768,351 - 11050 mRNA_2682 0.32 0.2
768,842 + 11050 mRNA_2682 0.55 -2.1
768,928 - 11050 mRNA_2682 0.59 0.1
769,104 - 11050 mRNA_2682 0.68 -0.5
769,708 - -1.0
769,779 + 1.2
769,825 + 0.0
769,911 - -0.3
770,065 + 1.4
770,157 + -3.0
770,200 - -0.0
770,328 + -1.5
770,451 - 11051 mRNA_2683 0.10 0.9
770,468 - 11051 mRNA_2683 0.10 -1.1
770,548 - 11051 mRNA_2683 0.12 0.3
770,562 + 11051 mRNA_2683 0.12 0.7
770,594 + 11051 mRNA_2683 0.13 -0.4
770,754 - 11051 mRNA_2683 0.16 1.1