Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2621

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2620: 10988 - ProSiteProfiles-Filamin/ABP280 repeat profile.-PS50194,SUPERFAMILY--SSF81296, at 609303 to 611052 10988 mRNA_2621: 10989 - K01711 gmd, GMDS GDPmannose 4,6-dehydratase, at 611391 to 613373 10989 mRNA_2622: 10990 - BLAST expressed protein [Schizophyllum commune H4-8], at 613719 to 614794 10990

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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610,424 - 10988 mRNA_2620 0.64 0.2
610,453 - 10988 mRNA_2620 0.66 0.5
610,570 - 10988 mRNA_2620 0.72 0.1
610,864 + 10988 mRNA_2620 0.89 -2.8
610,881 - -0.1
610,885 + -0.1
610,901 - -0.6
611,012 - -0.5
611,025 + 0.2
611,106 + 0.4
611,132 - -0.3
611,143 - 1.3
611,153 - 0.4
611,153 - 0.4
611,153 - -1.5
611,162 + 0.2
611,164 - -0.7
611,165 + 0.4
611,166 + 0.5
611,180 + -1.1
611,182 - -0.5
611,182 + -0.7
611,183 - 0.2
611,184 - -0.7
611,184 - -0.2
611,184 - -0.2
611,190 - -0.1
611,194 + 0.8
611,199 + 0.7
611,199 + -0.9
611,209 + 0.2
611,209 + 0.3
611,210 + -2.8
611,210 + 1.3
611,210 - -0.4
611,211 + -1.6
611,245 + 1.5
611,246 - -0.3
611,246 - 0.0
611,252 + 0.5
611,254 + 0.1
611,263 + 2.1
611,265 + -0.3
611,300 - -0.2
611,302 - 0.8
611,314 + -1.1
611,314 - 0.2
611,316 - -0.3
611,320 - 1.0
611,330 + 0.2
611,332 + 0.1
611,334 + -1.0
611,338 - 0.2
611,341 - 0.1
611,355 - 1.4
611,363 + -2.2
611,455 - 0.9
611,476 + 3.0
611,612 + 10989 mRNA_2621 0.11 0.1
611,614 - 10989 mRNA_2621 0.11 0.4
611,632 - 10989 mRNA_2621 0.12 0.5
611,632 - 10989 mRNA_2621 0.12 -0.1
611,682 - 10989 mRNA_2621 0.15 1.2
611,746 - 10989 mRNA_2621 0.18 0.5
611,748 - 10989 mRNA_2621 0.18 1.6
611,749 - 10989 mRNA_2621 0.18 -0.1
611,773 + 10989 mRNA_2621 0.19 1.0
611,792 + 10989 mRNA_2621 0.20 -0.1
611,793 - 10989 mRNA_2621 0.20 0.4
611,805 - 10989 mRNA_2621 0.21 -1.4
611,812 + 10989 mRNA_2621 0.21 -0.6
611,819 - 10989 mRNA_2621 0.22 2.0
611,848 + 10989 mRNA_2621 0.23 -0.6
611,891 - 10989 mRNA_2621 0.25 -0.9
611,906 - 10989 mRNA_2621 0.26 0.9
611,929 - 10989 mRNA_2621 0.27 0.7
611,982 + 10989 mRNA_2621 0.30 2.2
612,051 - 10989 mRNA_2621 0.33 1.1
612,063 + 10989 mRNA_2621 0.34 -0.9
612,092 + 10989 mRNA_2621 0.35 -0.1
612,350 - 10989 mRNA_2621 0.48 -0.1
612,502 + 10989 mRNA_2621 0.56 -0.4
612,583 - 10989 mRNA_2621 0.60 1.5
612,590 - 10989 mRNA_2621 0.60 -0.4
612,619 - 10989 mRNA_2621 0.62 0.1
612,661 + 10989 mRNA_2621 0.64 -0.6
612,757 - 10989 mRNA_2621 0.69 0.0
612,769 - 10989 mRNA_2621 0.69 0.4
612,773 - 10989 mRNA_2621 0.70 0.7
613,053 - 10989 mRNA_2621 0.84 0.6
613,083 + 10989 mRNA_2621 0.85 0.5
613,213 - -0.1
613,369 - -0.6
613,463 - 1.2
613,465 - 0.0
613,466 + -0.1
613,480 - 0.5
613,514 + -1.0
613,514 - 0.1
613,516 - -1.1
613,521 + -0.4
613,530 + 1.0
613,658 + -0.5
613,788 - 1.7
613,865 + 10990 mRNA_2622 0.14 0.5
613,946 - 10990 mRNA_2622 0.21 -0.0
614,053 + 10990 mRNA_2622 0.31 -0.6