Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2620

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2619: 10987 - Hypothetical Protein, at 608244 to 608759 10987 mRNA_2620: 10988 - ProSiteProfiles-Filamin/ABP280 repeat profile.-PS50194,SUPERFAMILY--SSF81296, at 609303 to 611052 10988 mRNA_2621: 10989 - K01711 gmd, GMDS GDPmannose 4,6-dehydratase, at 611391 to 613373 10989

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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608,388 + 10987 mRNA_2619 0.28 1.0
608,396 - 10987 mRNA_2619 0.29 -2.0
608,484 - 10987 mRNA_2619 0.47 1.2
608,486 - 10987 mRNA_2619 0.47 0.1
608,486 + 10987 mRNA_2619 0.47 1.4
608,511 - 10987 mRNA_2619 0.52 -0.7
608,516 - 10987 mRNA_2619 0.53 -0.4
608,655 - 10987 mRNA_2619 0.80 1.0
608,658 - 10987 mRNA_2619 0.80 2.0
608,663 - 10987 mRNA_2619 0.81 1.2
608,673 + 10987 mRNA_2619 0.83 -0.7
608,688 - 10987 mRNA_2619 0.86 0.3
608,787 + -0.5
608,794 - 0.9
608,795 + 0.7
608,804 - -1.4
608,819 + -1.4
608,837 - -0.0
608,913 + -0.5
608,936 - 0.1
608,942 - 0.1
608,945 - 1.5
608,946 - 2.4
608,947 + -0.1
608,950 - -0.9
608,952 - 0.6
608,953 - -0.4
608,953 + -0.1
608,954 - 0.5
608,958 - 0.8
608,968 + -1.7
609,004 + -0.1
609,014 + -2.5
609,030 + 0.4
609,031 + 1.8
609,069 + 0.7
609,073 + 1.4
609,109 + -0.7
609,209 + 1.5
609,213 - -1.0
609,240 + 0.8
609,250 + 0.7
609,253 + -0.5
609,257 + -0.5
609,263 - -0.3
609,265 - -1.0
609,276 + -0.4
609,366 + 1.5
609,367 - -0.2
609,371 - -0.1
609,379 + 0.1
609,380 - -0.3
609,380 - 1.3
609,382 + -0.3
609,384 - -0.5
609,385 + 1.6
609,399 - -0.0
609,405 - -0.2
609,407 - 0.4
609,416 + 1.1
609,416 - -1.4
609,448 + 2.4
609,526 - 10988 mRNA_2620 0.13 -1.0
609,528 + 10988 mRNA_2620 0.13 -0.6
609,537 - 10988 mRNA_2620 0.13 0.7
609,540 + 10988 mRNA_2620 0.14 1.2
609,546 - 10988 mRNA_2620 0.14 -0.8
609,548 + 10988 mRNA_2620 0.14 1.0
609,548 - 10988 mRNA_2620 0.14 1.0
609,550 + 10988 mRNA_2620 0.14 0.3
609,562 + 10988 mRNA_2620 0.15 1.6
609,562 + 10988 mRNA_2620 0.15 0.9
609,563 + 10988 mRNA_2620 0.15 -0.1
609,565 + 10988 mRNA_2620 0.15 -0.4
609,567 + 10988 mRNA_2620 0.15 1.1
609,573 - 10988 mRNA_2620 0.15 0.9
609,577 + 10988 mRNA_2620 0.16 2.1
609,593 + 10988 mRNA_2620 0.17 0.3
609,679 + 10988 mRNA_2620 0.21 -0.3
609,688 - 10988 mRNA_2620 0.22 1.1
609,691 + 10988 mRNA_2620 0.22 4.1
609,694 + 10988 mRNA_2620 0.22 1.2
609,701 - 10988 mRNA_2620 0.23 -0.1
609,704 - 10988 mRNA_2620 0.23 -1.4
609,721 - 10988 mRNA_2620 0.24 1.0
609,725 + 10988 mRNA_2620 0.24 -0.1
609,771 + 10988 mRNA_2620 0.27 1.2
609,838 + 10988 mRNA_2620 0.31 0.3
609,858 + 10988 mRNA_2620 0.32 0.2
610,005 - 10988 mRNA_2620 0.40 0.2
610,134 - 10988 mRNA_2620 0.47 -0.1
610,161 - 10988 mRNA_2620 0.49 1.6
610,424 - 10988 mRNA_2620 0.64 0.2
610,453 - 10988 mRNA_2620 0.66 0.5
610,570 - 10988 mRNA_2620 0.72 0.1
610,864 + 10988 mRNA_2620 0.89 -2.8
610,881 - -0.1
610,885 + -0.1
610,901 - -0.6
611,012 - -0.5
611,025 + 0.2
611,106 + 0.4
611,132 - -0.3
611,143 - 1.3
611,153 - 0.4
611,153 - 0.4
611,153 - -1.5
611,162 + 0.2
611,164 - -0.7
611,165 + 0.4
611,166 + 0.5
611,180 + -1.1
611,182 - -0.5
611,182 + -0.7
611,183 - 0.2
611,184 - -0.7
611,184 - -0.2
611,184 - -0.2
611,190 - -0.1
611,194 + 0.8
611,199 + 0.7
611,199 + -0.9
611,209 + 0.2
611,209 + 0.3
611,210 + -2.8
611,210 + 1.3
611,210 - -0.4
611,211 + -1.6
611,245 + 1.5
611,246 - -0.3
611,246 - 0.0
611,252 + 0.5
611,254 + 0.1
611,263 + 2.1
611,265 + -0.3
611,300 - -0.2
611,302 - 0.8
611,314 + -1.1
611,314 - 0.2
611,316 - -0.3
611,320 - 1.0
611,330 + 0.2
611,332 + 0.1
611,334 + -1.0
611,338 - 0.2
611,341 - 0.1
611,355 - 1.4
611,363 + -2.2
611,455 - 0.9
611,476 + 3.0
611,612 + 10989 mRNA_2621 0.11 0.1
611,614 - 10989 mRNA_2621 0.11 0.4
611,632 - 10989 mRNA_2621 0.12 0.5
611,632 - 10989 mRNA_2621 0.12 -0.1
611,682 - 10989 mRNA_2621 0.15 1.2
611,746 - 10989 mRNA_2621 0.18 0.5
611,748 - 10989 mRNA_2621 0.18 1.6
611,749 - 10989 mRNA_2621 0.18 -0.1
611,773 + 10989 mRNA_2621 0.19 1.0
611,792 + 10989 mRNA_2621 0.20 -0.1
611,793 - 10989 mRNA_2621 0.20 0.4
611,805 - 10989 mRNA_2621 0.21 -1.4
611,812 + 10989 mRNA_2621 0.21 -0.6
611,819 - 10989 mRNA_2621 0.22 2.0
611,848 + 10989 mRNA_2621 0.23 -0.6
611,891 - 10989 mRNA_2621 0.25 -0.9
611,906 - 10989 mRNA_2621 0.26 0.9
611,929 - 10989 mRNA_2621 0.27 0.7
611,982 + 10989 mRNA_2621 0.30 2.2
612,051 - 10989 mRNA_2621 0.33 1.1