Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2617

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2616: 10984 - KOG4076 Regulator of ATP-sensitive K+ channels Alpha-endosulfine/ARPP-19 and related cAMP-regulated phosphoproteins, at 604328 to 604979 10984 mRNA_2617: 10985 - HMMPfam-Carbonic anhydrase-PF00484,SMART-Carbonic anhydrase-SM00947,SUPERFAMILY--SSF53056, at 605466 to 606411 10985 mRNA_2618: 10986 - Hypothetical Protein, at 606513 to 607761 10986

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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604,542 - 10984 mRNA_2616 0.33 0.5
604,663 - 10984 mRNA_2616 0.51 1.3
604,703 - 10984 mRNA_2616 0.58 -2.1
604,716 + 10984 mRNA_2616 0.60 0.0
604,891 + 10984 mRNA_2616 0.86 -0.7
604,960 + 0.3
604,984 - -0.2
605,013 - -1.4
605,027 - 0.4
605,029 + 1.4
605,030 - 1.0
605,153 - 0.1
605,163 - 0.7
605,166 + -0.4
605,169 - 0.5
605,177 - -0.8
605,182 + -1.1
605,183 + -0.4
605,213 + -1.8
605,314 + -0.8
605,314 + 1.3
605,317 + -0.8
605,750 + 10985 mRNA_2617 0.30 -1.8
605,920 - 10985 mRNA_2617 0.48 1.2
606,018 + 10985 mRNA_2617 0.58 -0.5
606,274 - 10985 mRNA_2617 0.85 -0.1
606,780 + 10986 mRNA_2618 0.21 1.4