Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2612

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2611: 10979 - BLAST phosphatase iiic [Colletotrichum gloeosporioides ..., at 591297 to 591714 10979 mRNA_2612: 10980 - HMMPfam-Protein kinase C terminal domain-PF00433, at 591842 to 594740 10980 mRNA_2613: 10981 - K00223 ERG4 Delta24(24(1))-sterol reductase, at 594980 to 596945 10981

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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590,845 - -1.3
590,848 + -0.4
590,861 + 1.0
590,869 + 1.1
590,888 - 0.6
591,000 + 0.1
591,002 + -2.7
591,134 + -1.0
591,150 - 2.8
591,345 - 10979 mRNA_2611 0.11 0.4
591,453 + 10979 mRNA_2611 0.37 -0.6
592,171 + 10980 mRNA_2612 0.11 0.2
592,304 - 10980 mRNA_2612 0.16 0.7
592,306 + 10980 mRNA_2612 0.16 1.6
592,327 - 10980 mRNA_2612 0.17 -0.4
592,328 + 10980 mRNA_2612 0.17 1.0
592,934 - 10980 mRNA_2612 0.38 -0.5
593,067 + 10980 mRNA_2612 0.42 -0.8
593,350 - 10980 mRNA_2612 0.52 0.9
593,395 - 10980 mRNA_2612 0.54 -0.4
593,962 - 10980 mRNA_2612 0.73 -3.1
594,349 - 10980 mRNA_2612 0.86 -0.2
594,359 + 10980 mRNA_2612 0.87 0.3
594,373 + 10980 mRNA_2612 0.87 0.0
594,385 - 10980 mRNA_2612 0.88 -3.5
594,538 - 1.3
594,644 - -0.5
594,800 + -0.6
594,806 + -1.0
594,812 - 1.3
594,957 - -0.8
594,968 + 0.1
594,972 - 1.8
595,260 + 10981 mRNA_2613 0.14 -0.2