Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2596

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2595: 10963 - K14012 SHP1, UBX1, NSFL1C UBX domain-containing protein 1, at 559652 to 561565 10963 mRNA_2596: 10964 - K00966 GMPP mannose-1-phosphate guanylyltransferase, at 561715 to 563654 10964 mRNA_2597: 10965 - Hypothetical Protein, at 564104 to 565284 10965

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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561,679 + -1.1
561,681 + -0.6
561,688 + -0.6
561,689 + 0.3
561,819 + -1.5
561,839 + -0.4
561,847 - -0.4
562,000 - 10964 mRNA_2596 0.15 1.2
562,036 + 10964 mRNA_2596 0.17 -1.2
562,117 - 10964 mRNA_2596 0.21 0.6
562,125 + 10964 mRNA_2596 0.21 0.8
562,137 - 10964 mRNA_2596 0.22 0.8
562,140 + 10964 mRNA_2596 0.22 -0.4
562,287 - 10964 mRNA_2596 0.29 0.9
562,724 + 10964 mRNA_2596 0.52 0.9
562,860 - 10964 mRNA_2596 0.59 0.5
563,297 + 10964 mRNA_2596 0.82 -0.1
563,423 - 10964 mRNA_2596 0.88 -1.4
563,572 + 0.1
563,718 - -0.0
563,736 - 2.5
563,758 + -0.3
563,821 + -0.6
563,861 + -1.1
563,866 - -0.9
563,894 - 0.3
563,894 - 0.2
563,904 + -0.5
563,915 - 1.0
563,953 - 0.8
563,991 - 2.4
564,023 + 1.4
564,037 - -0.3
564,042 - 1.1
564,064 + -0.3
564,108 + 0.4
564,200 - -0.6
564,208 - -0.4
564,209 - 0.8
564,288 - 10965 mRNA_2597 0.16 0.0
564,351 - 10965 mRNA_2597 0.21 -1.9
564,355 - 10965 mRNA_2597 0.21 1.7
564,357 + 10965 mRNA_2597 0.21 2.9
564,402 - 10965 mRNA_2597 0.25 1.6
564,481 + 10965 mRNA_2597 0.32 -1.3
564,508 + 10965 mRNA_2597 0.34 -0.9